View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10195_low_18 (Length: 236)
Name: NF10195_low_18
Description: NF10195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10195_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 15394068 - 15393980
Alignment:
| Q |
14 |
gtgaagccatttcgaactgtattcaataacttccaactactaatttctatctgatactcccttgtcctcagtgtaaccctaaccatcac |
102 |
Q |
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| T |
15394068 |
gtgaagccatttcgaactgtattcaataacttccaactactaatttctatctgatactcccttgtcctcagtgtaaccctaaccatcac |
15393980 |
T |
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Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 15393916 - 15393840
Alignment:
| Q |
160 |
tgccaagtcaaagcaaggattcaaacaaatctataagtttggattgaagccggcaaacttcatatttgagtgaactt |
236 |
Q |
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| T |
15393916 |
tgccaagtcaaagcaaggattcaaacaaatctataagtttggattgaagccggcaaacttcatatttgagtgaactt |
15393840 |
T |
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