View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10195_low_20 (Length: 224)
Name: NF10195_low_20
Description: NF10195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10195_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 12739683 - 12739477
Alignment:
| Q |
1 |
aaaattcagatgcccaatatacccctccacctccatcctctccaatctagcgtagaagtcagtgatgctcccacacttgcgcacatatgctctcaagtcc |
100 |
Q |
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|||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
12739683 |
aaaattcatatgcccaaaatacccctccaccaccatcctctccaatctagcgtagaagtcagtgatgctcccactcttgc--acatatgctctcaagtcc |
12739586 |
T |
|
| Q |
101 |
tatataatacagttttggagtatatcataaactttgcattagaagggacaaaatagtaaaacctgcgcttcagagaggataaagagcaagtgtttgcgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12739585 |
tatataatacagttttggagtatatcataaactttgcattagaagggacataatagtaaaacctgcgcttgagagaggataaagagcaagtgtttgcgca |
12739486 |
T |
|
| Q |
201 |
tgcaatgat |
209 |
Q |
| |
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||||||||| |
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| T |
12739485 |
tgcaatgat |
12739477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 12802506 - 12802300
Alignment:
| Q |
1 |
aaaattcagatgcccaatatacccctccacctccatcctctccaatctagcgtagaagtcagtgatgctcccacacttgcgcacatatgctctcaagtcc |
100 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12802506 |
aaaattcatatgcccaaaatacccctccaccaccatcctctccagtctagcgtagaagtcagtgatgctcccacacttgc--acatatgctctcaagtcc |
12802409 |
T |
|
| Q |
101 |
tatataatacagttttggagtatatcataaactttgcattagaagggacaaaatagtaaaacctgcgcttcagagaggataaagagcaagtgtttgcgca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12802408 |
tatataatacagttttggagtatatcataaactttgcattagaagggacataatagtaaaacctgcgcttgagagaggataaagagcaagtgtttgcgca |
12802309 |
T |
|
| Q |
201 |
tgcaatgat |
209 |
Q |
| |
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||||||||| |
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|
| T |
12802308 |
tgcaatgat |
12802300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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