View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10195_low_4 (Length: 368)
Name: NF10195_low_4
Description: NF10195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10195_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 40127059 - 40126756
Alignment:
| Q |
17 |
aaaccaaacaaccactttttattacgtgtaagagacatcacacacatgacatttcgaatggtcagattaaagtttacaagtctagttatattaattaaaa |
116 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40127059 |
aaaccaaacaaccaatttttattacgtgtaagagacatcacacacatgacatttcgaatggtcagattaaagtttacaagtctagttatattaattaaaa |
40126960 |
T |
|
| Q |
117 |
ttgacatctatttacattgttcatgtttataatttgtttcatatatttagcatacctataaatgtgccatgtcannnnnnnnattttggacgtatatgca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40126959 |
ttgacatctatttacattgttcatgtttataatttgtttcatatatttagcatacctataaatgtgccatgtca--ttttttattttggacgtatatgca |
40126862 |
T |
|
| Q |
217 |
acacggattgcatgataagccactgccaccgacgtaatttatttacgtgataaggaaagagcaagatatcatag-ttgtgtaataaatgcttttgaaata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40126861 |
acacggattgcatgataagccactgccaccgacgtaatttatttacgtgataaggaaagagcaagatatcatagtttgtgtaataaatgcttttgaaata |
40126762 |
T |
|
| Q |
316 |
tcattc |
321 |
Q |
| |
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|||||| |
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| T |
40126761 |
tcattc |
40126756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 368
Target Start/End: Complemental strand, 40126729 - 40126694
Alignment:
| Q |
333 |
agatggcaacttctatgatccttctttattcttctc |
368 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
40126729 |
agatggcaacttctatgatccttctttatttttctc |
40126694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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