View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10195_low_5 (Length: 350)
Name: NF10195_low_5
Description: NF10195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10195_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 21320088 - 21319889
Alignment:
| Q |
17 |
atctttcgtcggcaacacctattgttttcgtggaactcaatttccttggaaatattcgcaggaaatatctaaatttcttgtagtgattgagcaacacaat |
116 |
Q |
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| T |
21320088 |
atctttcgtcggcaacacctattgttttcgtggaactcaatttccttggaaatattcgcaggaaatatctaaatttcttgtagtgattgagcaacacaat |
21319989 |
T |
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| Q |
117 |
atattcataaaaataattataatattctttattgccttaattcattttattaccaacatcatagaatacaaagccacagttgcaaggtccttgaaattat |
216 |
Q |
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| T |
21319988 |
atattcataaaaataattataatattctttattgccttaattcattttattaccaacatcatagaatacaaagccacagttgcaaggtccttgaaattat |
21319889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 21319825 - 21319762
Alignment:
| Q |
280 |
tatggaatattctagtgaaatgtatattgcatagtttttcctagtgtaaggactattcttctct |
343 |
Q |
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| T |
21319825 |
tatggaatattctagtgaaatgtatattgcatagtttttcctagtgtaaggactattcttctct |
21319762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 21316584 - 21316525
Alignment:
| Q |
282 |
tggaatattctagtgaaatgtatattgcatagtttttcctagtgtaa-ggactattcttc |
340 |
Q |
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| T |
21316584 |
tggaatattatagtaaaatgtatattgcatagtttttcctagcgtaagggactattcttc |
21316525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 4248412 - 4248458
Alignment:
| Q |
129 |
ataattataatattctttattgccttaattcattttattaccaacat |
175 |
Q |
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| T |
4248412 |
ataattataatattcattagtgccttaattcatttcattacaaacat |
4248458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 38316237 - 38316187
Alignment:
| Q |
131 |
aattataatattctttattgccttaattcattttattaccaacatcataga |
181 |
Q |
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| T |
38316237 |
aattataatattatttaatgccttatttcattttattatcaacatcttaga |
38316187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 25664940 - 25664862
Alignment:
| Q |
138 |
atattctttattgccttaattcattttattaccaacatcatagaatacaaagccacagttgcaaggtccttgaaattat |
216 |
Q |
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| T |
25664940 |
atattccttaatgccttaatttatttgattaccaacatgttagaatacaaaaccataattgaaaggtccatgaaattat |
25664862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 28198289 - 28198349
Alignment:
| Q |
130 |
taattataatattctttattgccttaattcattttattaccaacatcatagaatacaaagc |
190 |
Q |
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|||| |||||||||||| |||||| ||||||||||||||||||||| || | |||||||| |
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| T |
28198289 |
taatcataatattcttttgtgccttgattcattttattaccaacatcttatagtacaaagc |
28198349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 2013599 - 2013672
Alignment:
| Q |
142 |
tctttattgccttaattcattttattaccaacatcatagaatacaaagccacagttgcaaggtccttgaaatta |
215 |
Q |
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| T |
2013599 |
tctttagtgccttatttcatttcgttaccaacatcttagagtacaaatccatagttgcaaggttcgtgaaatta |
2013672 |
T |
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