View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10195_low_6 (Length: 350)

Name: NF10195_low_6
Description: NF10195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10195_low_6
NF10195_low_6
[»] chr7 (2 HSPs)
chr7 (19-338)||(44878411-44878730)
chr7 (250-333)||(44879608-44879691)
[»] chr6 (1 HSPs)
chr6 (19-116)||(28920539-28920637)
[»] chr4 (1 HSPs)
chr4 (19-116)||(42891222-42891320)
[»] chr8 (1 HSPs)
chr8 (248-300)||(29677386-29677438)
[»] chr1 (1 HSPs)
chr1 (248-300)||(26458584-26458636)


Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 44878411 - 44878730
Alignment:
Q  19 attgcaccaagcttagactgtcgatatcccttactttttatgtttgaagcagttccaaactcatcaccaacatcttggcaacacgagctacttgatcatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878411 attgcaccaagcttagactgtcgatatcccttactttttatgtttgaagcagttccaaactcatcaccaacatcttggcaacacgagctacttgatcatg 44878510  T
Q  119 tgcaagcactgtcactgcactgatcggaatcttagttcctacattactttgatatgcttatattgctcaccaccactcccagtagatggcttagttcatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878511 tgcaagcactgtcactgcactgatcggaatcttagttcctacattactttgatatgcttatattgctcaccaccactcccagtagatggcttagttcatc 44878610  T
Q  219 aactgctacactcgttccannnnnnncttcgtttaatgaaccttaaaatatgttttcttttgcgttaatctggtccttttaatttttccatctcatccat 318  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878611 aactgctacactcgttccatttttttcttcgtttaatgaaccttaaaatatgttttcttttgcgttaatctggtccttttaatttttccatctcatccat 44878710  T
Q  319 cattcatcccgttttgccta 338  Q
    ||||||||||||||||||||    
T  44878711 cattcatcccgttttgccta 44878730  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 44879691 - 44879608
Alignment:
Q  250 tttaatgaaccttaaaatatgttttcttttgcgttaatctggtccttttaatttttccatctcatccatcattcatcccgtttt 333  Q
    ||||||||||||||  |||||||||||||| | ||||| |||| |||||||| |||  ||||| | ||||||||||||| ||||    
T  44879691 tttaatgaaccttatgatatgttttcttttccattaatttggttcttttaatatttttatctcgttcatcattcatcccttttt 44879608  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 28920637 - 28920539
Alignment:
Q  19 attgcaccaagcttagactgtcgatatcccttactttttatgtttgaagcagttccaaactcatcaccaa-catcttggcaacacgagctacttgatca 116  Q
    ||||||||||||  |||||||||||   || |||| || |||||||||||||||||||||||||| |||| |||||| | ||||||||| | |||||||    
T  28920637 attgcaccaagcacagactgtcgattcaccctactcttgatgtttgaagcagttccaaactcatcgccaagcatcttagtaacacgagcaatttgatca 28920539  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 42891320 - 42891222
Alignment:
Q  19 attgcaccaagcttagactgtcgatatcccttactttttatgtttgaagcagttccaaactcatcaccaa-catcttggcaacacgagctacttgatca 116  Q
    ||||||||||||  |||||||||||   || ||||||| |||||||||||||||||| ||||||   ||| |||||||| |||||||| || |||||||    
T  42891320 attgcaccaagcacagactgtcgattcaccctacttttgatgtttgaagcagttccatactcattggcaagcatcttggtaacacgagatatttgatca 42891222  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 29677386 - 29677438
Alignment:
Q  248 cgtttaatgaaccttaaaatatgttttcttttgcgttaatctggtccttttaa 300  Q
    |||||||||| |||||| || ||||||||||||| |||||||| |||||||||    
T  29677386 cgtttaatgagccttaagatctgttttcttttgcattaatctgatccttttaa 29677438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 26458584 - 26458636
Alignment:
Q  248 cgtttaatgaaccttaaaatatgttttcttttgcgttaatctggtccttttaa 300  Q
    |||||||||| |||||| || ||||||||||||| |||||||| |||||||||    
T  26458584 cgtttaatgagccttaagatctgttttcttttgcattaatctgatccttttaa 26458636  T

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