View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10195_low_7 (Length: 330)
Name: NF10195_low_7
Description: NF10195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10195_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 76 - 302
Target Start/End: Original strand, 38139555 - 38139782
Alignment:
| Q |
76 |
atatgtactcatgagtcatgacatt-ggtgaatcttgttggtggtgtggtaatagtaaagacataaatccggtgcattttaattttagggacggcatttc |
174 |
Q |
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| T |
38139555 |
atatgtactcatgagtcatgacatttggtgaatcttgttggtggtgtggtaatagtaaagacataaatccggtgcattttaattttagggacggcatttc |
38139654 |
T |
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| Q |
175 |
agaatcaggaccaacgttttcttgaattttacaagtgctgcatggtaaaaagatgcagtaatagtccccctaaacaggaccaaccnnnnnnnncccctaa |
274 |
Q |
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| T |
38139655 |
agaaacaggaccaacgttttcttgaattttacaagtgctgcatggtaaaaagatgcagtaatagtccccctaaacaggaccaacctttttttccccctaa |
38139754 |
T |
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| Q |
275 |
atgtaatactgttttgaacttgcctttg |
302 |
Q |
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| T |
38139755 |
atgtaatactgttttgaacttgcctttg |
38139782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38117266 - 38117515
Alignment:
| Q |
1 |
tggatcgttaatatccgattcatttctgttgggttgtgttttactgtttatcattacattaaactttacttgaatatatgtactcatgagtcatgacat- |
99 |
Q |
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| T |
38117266 |
tggatcattaatatccaattcatttttattgggctgtgcttgactgtttatcattagattaaactttacttgaaaatatgtaatcatgagtcatgacata |
38117365 |
T |
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| Q |
100 |
tggtgaatcttgttggtggtgtggtaatagtaaagaca--taaatccggtgcattttaattttagggacggcatttcagaatcaggaccaa-----cgt- |
191 |
Q |
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| T |
38117366 |
tggttaaaattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggcatttcatgaacacgagtacaggaccgtg |
38117465 |
T |
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| Q |
192 |
tttcttgaattttacaagtgctgcatggtaaaaagatgcagtaatagtcc |
241 |
Q |
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| T |
38117466 |
tttcttgaattctgtaagtgctgcatggtaaaaagatgcagtagtagtcc |
38117515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 38161092 - 38161147
Alignment:
| Q |
1 |
tggatcgttaatatccgattcatttctgttgggttgtgttttactgtttatcatta |
56 |
Q |
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| T |
38161092 |
tggatcattaatatccaattcatttctgttgggctgtgttttacggtttatcatta |
38161147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 49005068 - 49005263
Alignment:
| Q |
1 |
tggatcgttaatatccgattcatttctgttgggttgtgttttactgtttatcattacattaaactttacttgaatatatgtactcatgagtcatgacatt |
100 |
Q |
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|||||| ||||||||| |||||||||| ||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||| |||| | |||||||||| |
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| T |
49005068 |
tggatcattaatatccaattcatttctattgggctgtgtttgactgtttatcattagattaaactttacttgaaaatatgtaatcatcattcatgacatt |
49005167 |
T |
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| Q |
101 |
-ggtgaatcttgttggtggtgtggtaatagtaaagaca--taaatccggtgcattttaattttagggacggcatttcagaatcaggaccaacgttt |
193 |
Q |
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||| || ||||||| ||| |||||||||||| |||| |||||| |||| ||| ||| | ||| |||||||||||| ||||||||| |||| |
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| T |
49005168 |
tggttaaaattgttggaggtatggtaatagtaatgacagataaatctatagcatcttagtttgaaggatggcatttcagaaacaggaccaatgttt |
49005263 |
T |
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