View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10196_high_1 (Length: 606)

Name: NF10196_high_1
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10196_high_1
NF10196_high_1
[»] chr4 (4 HSPs)
chr4 (9-324)||(25724888-25725204)
chr4 (411-593)||(25724624-25724804)
chr4 (319-357)||(18915076-18915114)
chr4 (319-357)||(46676528-46676566)
[»] chr8 (5 HSPs)
chr8 (10-160)||(9277190-9277340)
chr8 (10-154)||(31713396-31713539)
chr8 (116-154)||(31713878-31713916)
chr8 (116-162)||(40599879-40599925)
chr8 (329-357)||(444127-444155)
[»] chr2 (4 HSPs)
chr2 (10-154)||(4879056-4879199)
chr2 (319-357)||(12124538-12124576)
chr2 (319-357)||(31963096-31963134)
chr2 (319-357)||(40099413-40099451)
[»] chr3 (5 HSPs)
chr3 (118-154)||(50414475-50414511)
chr3 (116-154)||(53343866-53343904)
chr3 (320-357)||(2662086-2662123)
chr3 (320-353)||(9734785-9734818)
chr3 (329-357)||(47185834-47185862)
[»] chr1 (3 HSPs)
chr1 (75-154)||(27746127-27746206)
chr1 (319-357)||(2817403-2817441)
chr1 (319-355)||(13261164-13261200)
[»] scaffold0154 (1 HSPs)
scaffold0154 (319-357)||(10787-10825)
[»] chr7 (2 HSPs)
chr7 (327-357)||(28703509-28703539)
chr7 (327-355)||(3196674-3196702)
[»] chr5 (3 HSPs)
chr5 (327-357)||(28604448-28604478)
chr5 (319-357)||(34206220-34206258)
chr5 (110-158)||(2028333-2028381)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 25725204 - 25724888
Alignment:
Q  9 gagagagaagaaaacaaagaagtgtgatattgtgtaaaaagtgtatggtaggatagaagcaattagattaatcaaatggctattaatgtttttcacaatg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25725204 gagagagaagaaaacaaagaagtgtgatattgtgtaaaaagtgtatggtaggatacaagcaattagattaatcaaatggctattaatgtttttcacaatg 25725105  T
Q  109 atccattggtgagggacttgttagaaccctcaccctaaaatccacctaaataaagagtgactcttttatgtacc-nnnnnnnnnnnnngagtgactcttt 207  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||              ||||||||||||    
T  25725104 atccatcggtgagggatttgttagaaccctcaccttaaaatccacctaaataaagtgtgactcttttatgtaccaaaaaaaaaaaaaagagtgactcttt 25725005  T
Q  208 tttagtttcttgtacttctttttcttaaggacctaatttttaaaattagagcaaaaccacccaattgtttaagacgaactattgttattcttatcaaatt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25725004 tttagtttcttgtacttctttttcttaaggacctaatttttaaaattagagcaaaaccacccaattgtttaagacgaactattgttattcttatcaaatt 25724905  T
Q  308 tagtaatttactgtccc 324  Q
    |||||||||| ||||||    
T  25724904 tagtaatttaatgtccc 25724888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 411 - 593
Target Start/End: Complemental strand, 25724804 - 25724624
Alignment:
Q  411 ctcaatattcactcaatcatctaataaatctaaacannnnnnngggagttaacagaatatcaatctgtggacactatgtgaaatagattaaaaaatgcaa 510  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||    
T  25724804 ctcaatattcactcaatcatctaataaatctaaacatttttttgggagttaatagaatatcaatctgtggacact--gtgaaatagattaaaaaatgcaa 25724707  T
Q  511 ttaaacatatacttagtttttatgcaccacgcaaacatttgacccattttcagtttacgtatataaaaaataaagacaaaatt 593  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25724706 ttaaacatatacttagtttttatgcaccacgcaaacatttgacccattttcagtttacgtatttaaaaaataaagacaaaatt 25724624  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 18915114 - 18915076
Alignment:
Q  319 tgtccccatgagtttagctcagttggtaaagacaatgca 357  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  18915114 tgtccccgtgagtttagctcagttggtaaggacaatgca 18915076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 46676566 - 46676528
Alignment:
Q  319 tgtccccatgagtttagctcagttggtaaagacaatgca 357  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  46676566 tgtccccatgagcttagctcagttggtaaggacaatgca 46676528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 4e-58; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 9277340 - 9277190
Alignment:
Q  10 agagagaagaaaacaaagaagtgtgatattgtgtaaaaagtgtatggtaggatagaagcaattagattaatcaaatggctattaatgtttttcacaatga 109  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  9277340 agagagaagaaaacaaagaagcgtgatattgtgtaaagagtgtatggtaggatacaagcaattagattaatcaaatggctattaatgtttttcacaatgg 9277241  T
Q  110 tccattggtgagggacttgttagaaccctcaccctaaaatccacctaaata 160  Q
    ||||  | |||||||||||||||||||||||||||| |||||||| |||||    
T  9277240 tccaccgatgagggacttgttagaaccctcaccctagaatccacccaaata 9277190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 10 - 154
Target Start/End: Complemental strand, 31713539 - 31713396
Alignment:
Q  10 agagagaagaaaacaaagaagtgtgatattgtgtaaaaagtgtatggtaggatagaagcaattagattaatcaaatggctattaatgtttttcacaatga 109  Q
    ||||||||||||| ||||||||||||||||||| | |||||||| ||||||||| ||||| ||||||||||| ||||| ||||||||||||| | ||||     
T  31713539 agagagaagaaaagaaagaagtgtgatattgtgcataaagtgta-ggtaggatacaagcacttagattaatcgaatggatattaatgttttttataatgg 31713441  T
Q  110 tccattggtgagggacttgttagaaccctcaccctaaaatccacc 154  Q
    ||||  | ||||||||||||||||||| |||||||| ||||||||    
T  31713440 tccaccgatgagggacttgttagaaccttcaccctagaatccacc 31713396  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 31713878 - 31713916
Alignment:
Q  116 ggtgagggacttgttagaaccctcaccctaaaatccacc 154  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  31713878 ggtgagggacttgttagaaccctcaccctagaatccacc 31713916  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 40599925 - 40599879
Alignment:
Q  116 ggtgagggacttgttagaaccctcaccctaaaatccacctaaataaa 162  Q
    ||||||||||||||| ||||||||| |||| |||||||| |||||||    
T  40599925 ggtgagggacttgtttgaaccctcatcctagaatccaccaaaataaa 40599879  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 357
Target Start/End: Original strand, 444127 - 444155
Alignment:
Q  329 agtttagctcagttggtaaagacaatgca 357  Q
    |||||||||||||||||||||||||||||    
T  444127 agtttagctcagttggtaaagacaatgca 444155  T

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Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 10 - 154
Target Start/End: Complemental strand, 4879199 - 4879056
Alignment:
Q  10 agagagaagaaaacaaagaagtgtgatattgtgtaaaaagtgtatggtaggatagaagcaattagattaatcaaatggctattaatgtttttcacaatga 109  Q
    ||||||||||||| ||||||||||||||||||| | |||||||| ||||||||| ||||| ||||||||||| ||||| ||||||||||||| | ||||     
T  4879199 agagagaagaaaagaaagaagtgtgatattgtgcataaagtgta-ggtaggatacaagcacttagattaatcgaatggatattaatgttttttataatgg 4879101  T
Q  110 tccattggtgagggacttgttagaaccctcaccctaaaatccacc 154  Q
    ||||  | ||||||||||||||||||| |||||||| ||||||||    
T  4879100 tccaccgatgagggacttgttagaaccttcaccctagaatccacc 4879056  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 12124538 - 12124576
Alignment:
Q  319 tgtccccatgagtttagctcagttggtaaagacaatgca 357  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  12124538 tgtccccgtgagtttagctcagttggtaaggacaatgca 12124576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 31963134 - 31963096
Alignment:
Q  319 tgtccccatgagtttagctcagttggtaaagacaatgca 357  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  31963134 tgtccccatgagtatagctcagttggtaaggacaatgca 31963096  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 40099451 - 40099413
Alignment:
Q  319 tgtccccatgagtttagctcagttggtaaagacaatgca 357  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  40099451 tgtccccatgagcttagctcagttggtaaggacaatgca 40099413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 50414475 - 50414511
Alignment:
Q  118 tgagggacttgttagaaccctcaccctaaaatccacc 154  Q
    |||||||||||||| ||||||||||||||||||||||    
T  50414475 tgagggacttgttaaaaccctcaccctaaaatccacc 50414511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 53343866 - 53343904
Alignment:
Q  116 ggtgagggacttgttagaaccctcaccctaaaatccacc 154  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  53343866 ggtgagggacttgtttgaaccctcaccctagaatccacc 53343904  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 2662086 - 2662123
Alignment:
Q  320 gtccccatgagtttagctcagttggtaaagacaatgca 357  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  2662086 gtcctcataagtttagctcagttggtaaagacaatgca 2662123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 9734818 - 9734785
Alignment:
Q  320 gtccccatgagtttagctcagttggtaaagacaa 353  Q
    ||||||||||| ||||||||||||||||||||||    
T  9734818 gtccccatgagcttagctcagttggtaaagacaa 9734785  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 357
Target Start/End: Complemental strand, 47185862 - 47185834
Alignment:
Q  329 agtttagctcagttggtaaagacaatgca 357  Q
    |||||||||||||||||||||||||||||    
T  47185862 agtttagctcagttggtaaagacaatgca 47185834  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 27746127 - 27746206
Alignment:
Q  75 attaatcaaatggctattaatgtttttcacaatgatccattggtgagggacttgttagaaccctcaccctaaaatccacc 154  Q
    ||||||| ||||||| ||| |||| |||||  ||||||| |||||||||||||  | |||||||||| ||| ||||||||    
T  27746127 attaatctaatggctcttattgttattcacggtgatccactggtgagggacttaattgaaccctcacgctagaatccacc 27746206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 2817441 - 2817403
Alignment:
Q  319 tgtccccatgagtttagctcagttggtaaagacaatgca 357  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  2817441 tgtccccatgaatttagctcagttggtaaggacaatgca 2817403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 13261164 - 13261200
Alignment:
Q  319 tgtccccatgagtttagctcagttggtaaagacaatg 355  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  13261164 tgtcccgatgagtttaactcagttggtaaagacaatg 13261200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 10825 - 10787
Alignment:
Q  319 tgtccccatgagtttagctcagttggtaaagacaatgca 357  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  10825 tgtccccgtgagtttagctcagttggtaaggacaatgca 10787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 357
Target Start/End: Original strand, 28703509 - 28703539
Alignment:
Q  327 tgagtttagctcagttggtaaagacaatgca 357  Q
    |||||||||||||||||||||||||||||||    
T  28703509 tgagtttagctcagttggtaaagacaatgca 28703539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 355
Target Start/End: Complemental strand, 3196702 - 3196674
Alignment:
Q  327 tgagtttagctcagttggtaaagacaatg 355  Q
    |||||||||||||||||||||||||||||    
T  3196702 tgagtttagctcagttggtaaagacaatg 3196674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 357
Target Start/End: Complemental strand, 28604478 - 28604448
Alignment:
Q  327 tgagtttagctcagttggtaaagacaatgca 357  Q
    |||||||||||||||||||||||||||||||    
T  28604478 tgagtttagctcagttggtaaagacaatgca 28604448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 34206220 - 34206258
Alignment:
Q  319 tgtccccatgagtttagctcagttggtaaagacaatgca 357  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  34206220 tgtccccgtgagtttaactcagttggtaaagacaatgca 34206258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 2028381 - 2028333
Alignment:
Q  110 tccattggtgagggacttgttagaaccctcaccctaaaatccacctaaa 158  Q
    ||||| || |||||||||  | |||||||||||||||||||||||||||    
T  2028381 tccatcggcgagggacttagttgaaccctcaccctaaaatccacctaaa 2028333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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