View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10196_high_10 (Length: 287)
Name: NF10196_high_10
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 24 - 278
Target Start/End: Original strand, 31738115 - 31738372
Alignment:
| Q |
24 |
gggttaggttaatatttcaccaatcaagcacgnnnnnnnnnctctttatgtt---tctacat---gtattaaataannnnnnnactggaagaattaagga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
31738115 |
gggttaggttaatatttcaccaatcaagcacgtttttt---ctctttatgttgtttctacatctagtattaaataatttttttactggaagaattaagga |
31738211 |
T |
|
| Q |
118 |
tgacagaaagtcattttcacttttcatcattttctaatgtaatatttcaacttttatcatcttaatcgatgtcttaagtacattctttagcatttctcaa |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31738212 |
tgacagaaaatcattttcacttttcatcattttctaatgcaatatttcaacttttatcatcttaatcaatgtcttaagtacattctttagcatttctcaa |
31738311 |
T |
|
| Q |
218 |
gaaaaaagggcaacaatgtttgtactctctccttcactaatgtttggttttttcttcttct |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31738312 |
gaaaaaagggcaacaatgtttgtactctctccttcactaatgtttggttttttcttcttct |
31738372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 38870054 - 38870105
Alignment:
| Q |
133 |
ttcacttttcatcattttctaatgtaatatttcaacttttatcatcttaatc |
184 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||| | |||||||||||||||| |
|
|
| T |
38870054 |
ttcacttttcatcattttccaatgcaatgtttctatttttatcatcttaatc |
38870105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 6841754 - 6841705
Alignment:
| Q |
134 |
tcacttttcatcattttctaatgtaatatttcaacttttatcatcttaat |
183 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | ||||||| ||||||| |
|
|
| T |
6841754 |
tcacttttcatcattttctaatacaatatttctatttttatcctcttaat |
6841705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 29247972 - 29248023
Alignment:
| Q |
133 |
ttcacttttcatcattttctaatgtaatatttcaacttttatcatcttaatc |
184 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||| | |||||||||||||||| |
|
|
| T |
29247972 |
ttcacttttcatcgttttccaatgtaatgtttctatttttatcatcttaatc |
29248023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 48938683 - 48938734
Alignment:
| Q |
131 |
ttttcacttttcatcattttctaatgtaatatttcaacttttatcatcttaa |
182 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| | |||||||||||||| |
|
|
| T |
48938683 |
ttttcacttttcaccattttctaatacaatatttctatttttatcatcttaa |
48938734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University