View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10196_high_23 (Length: 238)
Name: NF10196_high_23
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 13412672 - 13412783
Alignment:
| Q |
1 |
attcagaagagaagttcatggaaatttctcttcacaaaaccacaatccgtcgaacaaaaagtatcaccattcattaaaatatgtctcctaaacaagttat |
100 |
Q |
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| T |
13412672 |
attcataagagaagttcatggaaatttctcttcacaaaaccacaatccgtcgaacaaaaagtatcaccattcatcaaaatatgtctcctaaacaagttat |
13412771 |
T |
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| Q |
101 |
cctttgttgcta |
112 |
Q |
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|||||||||||| |
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| T |
13412772 |
cctttgttgcta |
13412783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 13412844 - 13412954
Alignment:
| Q |
112 |
acaaaatctgattgaaaccttcattgtgaacaacttcagcaacagtcaggttattataagcaacttctagatgtataccattggaaagaatgaagcttcc |
211 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13412844 |
acaaaacctaattgaaaccttcattgtgaacaacttcagcaacagtcaggttattataagcaacttctaactgtataccattggaaagaatgaagcttcc |
13412943 |
T |
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| Q |
212 |
aacccactagt |
222 |
Q |
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||||||||||| |
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| T |
13412944 |
aacccactagt |
13412954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 12961421 - 12961342
Alignment:
| Q |
33 |
cacaaaaccacaatccgtcgaacaaaaagtatcaccattcattaaaatatgtctcctaaacaagttatcctttgttgcta |
112 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||||| |
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| T |
12961421 |
cacaaaaccacaatctactgaacaaaaagtatcaccattcaccaaattatgtcgccttaacaagttatcctttgttgcta |
12961342 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 12961273 - 12961220
Alignment:
| Q |
120 |
tgattgaaaccttcattgtgaacaacttcagcaacagtcaggttattataagca |
173 |
Q |
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|||||||||||||||||||||||||||||| || || ||| ||||||||||||| |
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| T |
12961273 |
tgattgaaaccttcattgtgaacaacttcaacatcaatcaagttattataagca |
12961220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 13997207 - 13997174
Alignment:
| Q |
76 |
aaaatatgtctcctaaacaagttatcctttgttg |
109 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
13997207 |
aaaatatgtcgcctaaacaagttatcctttgttg |
13997174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 33317295 - 33317373
Alignment:
| Q |
34 |
acaaaaccacaatccgtcgaacaaaaagtatcaccattcattaaaatatgtctcctaaacaagttatcctttgttgcta |
112 |
Q |
| |
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|||||||||||| ||| ||||||||| ||||| |||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
33317295 |
acaaaaccacaacccgctgaacaaaaattatcatcattcaccaaaatatgttgcctaaacaagttatcctttgttgcta |
33317373 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 33317442 - 33317531
Alignment:
| Q |
120 |
tgattgaaaccttcattgtgaacaacttcagcaacagtcaggttattataagcaacttctagatgtataccattggaaagaatgaagcttc |
210 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||| || |||||| | |||| |||||||||||||| |
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| T |
33317442 |
tgattgaaaccttcattgtgaacaacttcagtaacagtcaaattattttaag-aacttttaattgtataacgttgggaagaatgaagcttc |
33317531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 23228770 - 23228823
Alignment:
| Q |
120 |
tgattgaaaccttcattgtgaacaacttcagcaacagtcaggttattataagca |
173 |
Q |
| |
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||||||||||||||||| | |||||||| |||| |||||| ||||||||||||| |
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| T |
23228770 |
tgattgaaaccttcattataaacaactttagcagcagtcaagttattataagca |
23228823 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 23228618 - 23228697
Alignment:
| Q |
33 |
cacaaaaccacaatccgtcgaacaaaaagtatcaccattcattaaaatatgtctcctaaacaagttatcctttgttgcta |
112 |
Q |
| |
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|||||||| |||||| ||||||||||||||||| ||||| |||||||| | |||||||||||||| ||| |||||| |
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| T |
23228618 |
cacaaaactacaatcaatcgaacaaaaagtatcagaattcaccaaaatatgccatctaaacaagttatcatttattgcta |
23228697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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