View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10196_high_27 (Length: 226)
Name: NF10196_high_27
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_high_27 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 49433576 - 49433351
Alignment:
| Q |
1 |
aataattgtgttcaattttgaaatggtaatttctcggatgatcagtcaagcaattaattgaatatattttgggataaactgtgtcaagagctctgcatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49433576 |
aataattgtgttcaattttgaaatggtaatttctcggatgatcagtcaagcaattgattgaatatattttgggataaactgtgtcaagagctctgcatat |
49433477 |
T |
|
| Q |
101 |
actattcatgaatgtcctgccttgccattccttgacagtcatactaatgtttctttcatcttgactgattatatttttcatcttattgnnnnnnnnnnat |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
49433476 |
actattcatgaatgtcttgccttgccattccttgacagtcatactaatgtttctttcatcttgactgattatatttttcatcttattgttttttttttat |
49433377 |
T |
|
| Q |
201 |
ttgactcatattcaaaatgctctgcc |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
49433376 |
ttgactcatattcaaaatgctctgcc |
49433351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 22377837 - 22377612
Alignment:
| Q |
1 |
aataattgtgttcaattttgaaatggtaatttctcggatgatcagtcaagcaattaattgaatatattttgggataaactgtgtcaagagctctgcatat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22377837 |
aataactgtgttcaattttgaaatggtaatttcttggatgatcagtcaagcaattaattgaatatattttgggataaactgtgtcaagagctctgcatat |
22377738 |
T |
|
| Q |
101 |
actattcatgaatgtcctgccttgccattccttgacagtcatactaatgtttctttcatcttgactgattatatttttcatcttattgnnnnnnnnnnat |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
22377737 |
actattcatgaatgtcctaccttgccatgccttcacagtcatactaatgtttctttcatcttgactgattatatttttcatcttattgttttttttttat |
22377638 |
T |
|
| Q |
201 |
ttgactcatattcaaaatgctctgcc |
226 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
22377637 |
ttgattcatattcaaaatgctctgcc |
22377612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University