View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10196_high_3 (Length: 373)
Name: NF10196_high_3
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 6587645 - 6587983
Alignment:
| Q |
20 |
attgggacgagtcatcgcaatcggtgttttgttcttcggaatcgtcgtcgtaannnnnnnnnnnnnnnnnagaggaagaggagagaacaatcactgttct |
119 |
Q |
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| T |
6587645 |
attgggacgagtcatcgcaatcggtgttttgttcttcggaatcgtcgtcgtaatcttcttcttcttcttcagaggaagaggagagaacaatcactgttct |
6587744 |
T |
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| Q |
120 |
ttttcctctcctctcatccannnnnnngtagctgtaattgtatttgcagacacgccgcggtatttattcgtgtaaaaatatttgaaattgaaatgaaaca |
219 |
Q |
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| T |
6587745 |
ttttcctctcctctcatccatttttttgtagctgtaattgtatttgcagacacgccgcggtatttattcgtgtaaaaatatttgaaattgaaatgaaaca |
6587844 |
T |
|
| Q |
220 |
agcatagag-aaagagcggctctaggcctgagcttaattcatccctttttctatcaaaaatcaataatctctttagtnnnnnnntaaaggttaaattaga |
318 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
6587845 |
agcatagagaaaagagcggctctaggcctgagcttaattcatccctttttctataaaaaatcaataatctctttagtaaaaaaataaaggttaaattaga |
6587944 |
T |
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| Q |
319 |
ccgggagtcttttcggtttgaggtttgtaatagatcggt |
357 |
Q |
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||| |||||||| |||||||||||||||||||||||| |
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| T |
6587945 |
tcggaagtctttttagtttgaggtttgtaatagatcggt |
6587983 |
T |
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