View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10196_high_4 (Length: 369)

Name: NF10196_high_4
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10196_high_4
NF10196_high_4
[»] chr2 (6 HSPs)
chr2 (81-354)||(23348826-23349102)
chr2 (82-354)||(18355159-18355434)
chr2 (93-354)||(12741699-12741963)
chr2 (82-354)||(10328743-10329013)
chr2 (80-255)||(1615863-1616037)
chr2 (83-255)||(24454516-24454688)
[»] chr7 (5 HSPs)
chr7 (82-354)||(43071228-43071503)
chr7 (81-354)||(1262087-1262364)
chr7 (81-354)||(48849652-48849929)
chr7 (81-344)||(26909842-26910103)
chr7 (89-158)||(22007347-22007416)
[»] chr5 (10 HSPs)
chr5 (77-354)||(9043797-9044077)
chr5 (82-354)||(7473335-7473610)
chr5 (83-354)||(30442393-30442667)
chr5 (82-276)||(22009453-22009649)
chr5 (93-179)||(26840988-26841074)
chr5 (82-158)||(19085422-19085498)
chr5 (88-219)||(22004441-22004571)
chr5 (285-344)||(19085182-19085241)
chr5 (287-344)||(22009398-22009455)
chr5 (82-118)||(30463136-30463172)
[»] chr3 (12 HSPs)
chr3 (82-344)||(53973143-53973407)
chr3 (89-344)||(19881968-19882225)
chr3 (81-354)||(37982348-37982627)
chr3 (81-344)||(31685076-31685341)
chr3 (82-253)||(17681767-17681938)
chr3 (82-219)||(12538620-12538756)
chr3 (82-225)||(2549937-2550079)
chr3 (81-219)||(24761882-24762020)
chr3 (82-219)||(24815915-24816052)
chr3 (82-219)||(53352745-53352882)
chr3 (82-219)||(53027736-53027873)
chr3 (82-110)||(32015784-32015812)
[»] scaffold0596 (1 HSPs)
scaffold0596 (82-354)||(654-929)
[»] scaffold0035 (1 HSPs)
scaffold0035 (79-352)||(35060-35336)
[»] chr6 (8 HSPs)
chr6 (89-354)||(33045277-33045545)
chr6 (82-353)||(10092512-10092772)
chr6 (89-220)||(8976411-8976542)
chr6 (81-193)||(3065697-3065808)
chr6 (81-158)||(16246701-16246778)
chr6 (89-158)||(30908414-30908483)
chr6 (83-157)||(4660222-4660295)
chr6 (285-344)||(30908174-30908233)
[»] chr8 (10 HSPs)
chr8 (82-354)||(5657771-5658046)
chr8 (82-354)||(14677868-14678142)
chr8 (82-354)||(31100718-31100993)
chr8 (82-255)||(27541507-27541679)
chr8 (30-83)||(43519520-43519573)
chr8 (82-157)||(23738657-23738731)
chr8 (81-157)||(24788079-24788155)
chr8 (82-155)||(33689343-33689415)
chr8 (285-342)||(33689158-33689215)
chr8 (79-118)||(8158458-8158497)
[»] chr4 (2 HSPs)
chr4 (82-344)||(29863218-29863482)
chr4 (81-143)||(12506435-12506497)
[»] scaffold0045 (1 HSPs)
scaffold0045 (82-354)||(11480-11755)
[»] scaffold0096 (1 HSPs)
scaffold0096 (81-219)||(27409-27546)
[»] chr1 (2 HSPs)
chr1 (86-158)||(50990911-50990983)
chr1 (81-118)||(25223218-25223255)
[»] scaffold0157 (1 HSPs)
scaffold0157 (81-143)||(13980-14042)
[»] scaffold0475 (1 HSPs)
scaffold0475 (91-157)||(7520-7585)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 81 - 354
Target Start/End: Complemental strand, 23349102 - 23348826
Alignment:
81 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctc 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
23349102 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctc 23349003  T
181 atcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcat 278  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||    
23349002 atcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcat 23348903  T
279 taattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttca-ttttaagttctctt 354  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
23348902 taattatcctccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctctt 23348826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 82 - 354
Target Start/End: Complemental strand, 18355434 - 18355159
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||    
18355434 atcatacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggtcgttggatctca 18355335  T
182 tcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcatt 279  Q
    |||||||||||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||    
18355334 tcatttggctaagcatgcatctcatcctttaatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcatt 18355235  T
280 aattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttca-ttttaagttctctt 354  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
18355234 aattatcctccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctctt 18355159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 93 - 354
Target Start/End: Original strand, 12741699 - 12741963
Alignment:
93 atctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggcta 192  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
12741699 atctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaaaggaggccgttggatctcatcatttggcta 12741798  T
193 accatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcattaattatcctcc 290  Q
    | ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||    
12741799 agcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcctcc 12741898  T
291 aattcctaaattgactccacacttatctatgtccacctctttctccttca-ttttaagttctctt 354  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
12741899 aattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctctt 12741963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 82 - 354
Target Start/End: Complemental strand, 10329013 - 10328743
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| || ||||||||||||||||||||||||||    
10329013 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaattgttttggttctaaaacaagggaggccgttggatctca 10328914  T
182 tcatttggctaaccatgcatctcat-catttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcat 278  Q
    |||||||||||| |||||||||||| | |||||||||||| |||||||||||  |||||||      ||||||||  ||||||||||| |||||||||||    
10328913 tcatttggctaagcatgcatctcatccttttgatctaatctgagtcaaatttgaaaatttg------atttcctatgcacttatccaagttttgactcat 10328820  T
279 taattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttca-ttttaagttctctt 354  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
10328819 taattatcctccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctctt 10328743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 80 - 255
Target Start/End: Complemental strand, 1616037 - 1615863
Alignment:
80 caatcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatct 179  Q
    ||||||| |||||||| ||||||||||||||||| ||||||  ||| || |  ||||  ||||||||||| |||||||| ||||||||  |||||||||     
1616037 caatcatccttatatccaatctttgttaacattgttaatgactttgtaaccattaaatctaaatggtttttgctccaaa-caagggagatcgttggatcg 1615939  T
180 catcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta 255  Q
    |||||||||||||| ||||||||||||| |||||||||||  |||||||| |||||||||||||||||||||||||    
1615938 catcatttggctaagcatgcatctcatcctttgatctaatttgagtcaaactttcaaatttgatgtatatttccta 1615863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 83 - 255
Target Start/End: Original strand, 24454516 - 24454688
Alignment:
83 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctcat 182  Q
    ||||||||||||||||||||  |||||||||||||    ||||||||  |||||| |||||  ||| ||| ||||| |||||  ||||||||||||||||    
24454516 tcatacttatatctaatcttaattaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgccaaa-caaggagggccgttggatctcat 24454614  T
183 catttggctaaccatgcatctcatcatttgatctaatccga-gtcaaattttcaaatttgatgtatatttccta 255  Q
    |||||||||   ||| ||||||||| |||||||||||| ||  ||||| ||||||||||||||| | |||||||    
24454615 catttggcttgacattcatctcatcctttgatctaatctgacttcaaactttcaaatttgatgtctttttccta 24454688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 82 - 354
Target Start/End: Complemental strand, 43071503 - 43071228
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
43071503 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 43071404  T
182 tcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcatt 279  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||    
43071403 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcatt 43071304  T
280 aattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttca-ttttaagttctctt 354  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
43071303 aattatcctccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctctt 43071228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 81 - 354
Target Start/End: Original strand, 1262087 - 1262364
Alignment:
81 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctc 180  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||    
1262087 aatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggatctc 1262186  T
181 atcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcat 278  Q
    ||||||||||||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||| |||||||||||    
1262187 atcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttatccaagttttgactcat 1262286  T
279 taattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttca--ttttaagttctctt 354  Q
    |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||  ||||||||||||||    
1262287 taattatcctccaattcccaaattgactccacacttatcgatgttcacctctttctccttcattttttaagttctctt 1262364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 81 - 354
Target Start/End: Complemental strand, 48849929 - 48849652
Alignment:
81 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctc 180  Q
    ||||||||||||||||||||||||||||||||||||||||  ||| |||  |||||| ||||||||||||||||||||||||||||    ||||||||||    
48849929 aatcatacttatatctaatctttgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaaacaagggattttgttggatctc 48849830  T
181 atcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcat 278  Q
    ||||||||||||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||| |||||||||||    
48849829 atcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttatccaagttttgactcat 48849730  T
279 taattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttca--ttttaagttctctt 354  Q
    ||||||||||| |||||| |||||||||||||||||||| |||| |||||||||||||||||  ||||||||||||||    
48849729 taattatcctcaaattcccaaattgactccacacttatcgatgttcacctctttctccttcattttttaagttctctt 48849652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 81 - 344
Target Start/End: Complemental strand, 26910103 - 26909842
Alignment:
81 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctc 180  Q
    |||||||||||||||||||||||||||||||||||||| |  |||||||| |||||| ||||||| ||||||||||||||||||||| || ||||||||     
26910103 aatcatacttatatctaatctttgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatctt 26910004  T
181 atcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcat 278  Q
    ||||||||||||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||  ||||||| ||| |||||||||      
26910003 atcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttattcaagttttgactc-- 26909906  T
279 taattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttcatttt 344  Q
      |||||||||||||||| | |||||||||||||||||| ||| |||||| |||||||||||||||    
26909905 --attatcctccaattcccagattgactccacacttatccatgcccacctttttctccttcatttt 26909842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 22007347 - 22007416
Alignment:
89 ttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaa 158  Q
    ||||||||||| ||||||||||||||||||||  || ||||| |||||  ||||||||||||||||||||    
22007347 ttatatctaatttttgttaacattgctaatgactttacaaaccctaaatctaaatggttttggctccaaa 22007416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 77 - 354
Target Start/End: Original strand, 9043797 - 9044077
Alignment:
77 aagcaatcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttgga 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
9043797 aagcaatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttgga 9043896  T
177 tctcatcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgac 274  Q
    ||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||  || |||||||| |||||||    
9043897 tctcatcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaatttttaaatttgatgtatatttcctatgcatttatccaagttttgac 9043996  T
275 tcattaattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttca-ttttaagttctctt 354  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
9043997 tcattaattatcctccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctctt 9044077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 82 - 354
Target Start/End: Complemental strand, 7473610 - 7473335
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
7473610 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 7473511  T
182 tcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcatt 279  Q
    |||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||    
7473510 tcatttagctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcatt 7473411  T
280 aattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttca-ttttaagttctctt 354  Q
    | ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
7473410 agttatcctccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctctt 7473335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 83 - 354
Target Start/End: Complemental strand, 30442667 - 30442393
Alignment:
83 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctcat 182  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
30442667 tcatgcttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 30442568  T
183 catttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcatta 280  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||  ||||| ||||| |||||||||||||    
30442567 catttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttttccaagttttgactcatta 30442468  T
281 attatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttcatttt-aagttctctt 354  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
30442467 attatcctccaattcccaaattgactccacacttatcgatgtccacctctttctccttcattttaaagttctctt 30442393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 82 - 276
Target Start/End: Complemental strand, 22009649 - 22009453
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
22009649 atcatacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 22009550  T
182 tcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactc 276  Q
    |||||||||||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||  | ||||||||| |||||||||    
22009549 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgctcttatccaagttttgactc 22009453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 26841074 - 26840988
Alignment:
93 atctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatct 179  Q
    ||||||||||||||||||||||||||||  |||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||    
26841074 atctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatct 26840988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 19085498 - 19085422
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaa 158  Q
    ||||||||||||| |||||||||||||||||||||||||  |||||||| |||||| ||||||||||||||||||||    
19085498 atcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 19085422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 22004571 - 22004441
Alignment:
88 cttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctcatcattt 187  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||||| || || |||| ||| || || |||||  | |||||||||||||||||||    
22004571 cttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgcc-aatcaaggtggtccgttggatctcatcattt 22004473  T
188 ggctaaccatgcatctcatcatttgatctaat 219  Q
    |||| | ||| ||| ||||| |||||||||||    
22004472 ggctcagcattcatatcatcctttgatctaat 22004441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 19085241 - 19085182
Alignment:
285 tcctccaattcctaaattgactccacacttatctatgtccacctctttctccttcatttt 344  Q
    |||||||||||| | |||||||||||||||||| ||  ||||||||||||||| ||||||    
19085241 tcctccaattcccatattgactccacacttatcgatacccacctctttctcctccatttt 19085182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 22009455 - 22009398
Alignment:
287 ctccaattcctaaattgactccacacttatctatgtccacctctttctccttcatttt 344  Q
    |||||||||| |||||||||||||||||||| ||| | |||| |||||||||| ||||    
22009455 ctccaattcccaaattgactccacacttatcgatgccaacctttttctccttcctttt 22009398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 30463172 - 30463136
Alignment:
82 atcatacttatatctaatctttgttaacattgctaat 118  Q
    ||||||||||||||||||||||||||||| |||||||    
30463172 atcatacttatatctaatctttgttaacaatgctaat 30463136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 82 - 344
Target Start/End: Complemental strand, 53973407 - 53973143
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||    
53973407 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctca 53973308  T
182 tcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcatt 279  Q
    |||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
53973307 tcatttggctaagcctgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaaattttgactcatt 53973208  T
280 aattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttcatttt 344  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
53973207 aattatcctccaattctcaaattgactccacacttatcgatgtccacctctttctccttcatttt 53973143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 89 - 344
Target Start/End: Complemental strand, 19882225 - 19881968
Alignment:
89 ttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 188  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
19882225 ttatatctaatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttg 19882126  T
189 gctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcattaattatc 286  Q
    ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
19882125 gctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaaattttgactcattaattatc 19882026  T
287 ctccaattcctaaattgactccacacttatctatgtccacctctttctccttcatttt 344  Q
    |||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||    
19882025 ctccaattcccaaattgactccacatttatcgatgtccacctctttctccttcatttt 19881968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 81 - 354
Target Start/End: Original strand, 37982348 - 37982627
Alignment:
81 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctc 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||    
37982348 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctc 37982447  T
181 atcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--ca---cttatccaaattttgact 275  Q
    ||||||||||||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||  ||   ||||||||| ||||||||    
37982448 atcatttggctaagcatgcatctcatcctttaatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacgtcttatccaagttttgact 37982547  T
276 cattaattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttca-ttttaagttctctt 354  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
37982548 cattaattatcctccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctctt 37982627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 81 - 344
Target Start/End: Original strand, 31685076 - 31685341
Alignment:
81 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctc 180  Q
    ||||||||||||||||||||||| ||||||||||||||||  |||||||| |||||| ||||||||||||||||||||| |||||||||||||| |||||    
31685076 aatcatacttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttgaatctc 31685175  T
181 atcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcat 278  Q
    ||||||||||||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||  ||||||| ||| |||||||||||    
31685176 atcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttattcaagttttgactcat 31685275  T
279 taattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttcatttt 344  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
31685276 taattatcctccaattctcaaattgactccacacttatcgatgtccacctctttctccttcatttt 31685341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 82 - 253
Target Start/End: Original strand, 17681767 - 17681938
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||| |||||| ||||||||||||||||| ||||||||| |||||||||||||||    
17681767 atcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaaggggggccgttggatctca 17681865  T
182 tcatttggctaaccatgcatctcatcatttgatctaatc-cgagtcaaattttcaaatttgatgtatatttcc 253  Q
    |||||||| ||| ||||||||||||| ||||||||||||  |||||||||||| |||||| ||||||||||||    
17681866 tcatttggttaagcatgcatctcatcctttgatctaatcttgagtcaaatttttaaatttaatgtatatttcc 17681938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 12538756 - 12538620
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    |||||||||||||||||||||||||||| || |||||||  |||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||    
12538756 atcatacttatatctaatctttgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaagggaggccgttggatctca 12538658  T
182 tcatttggctaaccatgcatctcatcatttgatctaat 219  Q
    |||||||||||| |||||||| |||| |||||||||||    
12538657 tcatttggctaagcatgcatcacatcctttgatctaat 12538620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 2549937 - 2550079
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    |||||||||||||||||||||  ||||||||||||||||  |||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| |    
2549937 atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatct-a 2550035  T
182 tcatttggctaaccatgcatctcatcatttgatctaatccgagt 225  Q
    |||||||||||| ||||||||||||| |||||| ||||| ||||    
2550036 tcatttggctaagcatgcatctcatcctttgatttaatctgagt 2550079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 24762020 - 24761882
Alignment:
81 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctc 180  Q
    |||||||||||||||||||| || ||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||| |  | ||||||||||||    
24762020 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctc 24761921  T
181 atcatttggctaaccatgcatctcatcatttgatctaat 219  Q
    ||||||||||| | ||||||||||||| |||||||||||    
24761920 atcatttggctcagcatgcatctcatcctttgatctaat 24761882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 24815915 - 24816052
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    ||||||||||||||||||| || ||||||||||||||||  |||||||| |||||| |||||||||||||||||||||| | |  |||||||||||||||    
24815915 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctggccgttggatctca 24816014  T
182 tcatttggctaaccatgcatctcatcatttgatctaat 219  Q
    |||||||||| | ||||||||||||| |||||||||||    
24816015 tcatttggctcagcatgcatctcatcctttgatctaat 24816052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 53352882 - 53352745
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    ||||||||||||||||||| || ||||||||||||||||  ||||||||||||||| |||| ||||||||||||||||| | |  | |||||||||||||    
53352882 atcatacttatatctaatccttcttaacattgctaatgactttgcaaactctaaacctaaacggttttggctccaaaacgatgctgaccgttggatctca 53352783  T
182 tcatttggctaaccatgcatctcatcatttgatctaat 219  Q
    |||||||||| |   ||||||||||| |||||| ||||    
53352782 tcatttggctcagtgtgcatctcatcctttgatttaat 53352745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 53027873 - 53027736
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    ||||||||||||||||||| || |||||| ||||||| |  || ||||| |||||| |||||||||||| ||||||||  | |  | |||||||||||||    
53027873 atcatacttatatctaatccttcttaacactgctaataactttacaaaccctaaacctaaatggttttgactccaaaatgatgctgaccgttggatctca 53027774  T
182 tcatttggctaaccatgcatctcatcatttgatctaat 219  Q
    |||||||||| | ||||||||||||| |||||||||||    
53027773 tcatttggctcagcatgcatctcatcctttgatctaat 53027736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 32015812 - 32015784
Alignment:
82 atcatacttatatctaatctttgttaaca 110  Q
    |||||||||||||||||||||||||||||    
32015812 atcatacttatatctaatctttgttaaca 32015784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 82 - 354
Target Start/End: Original strand, 654 - 929
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||||    
654 atcatacttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttgactccaaaataagggaggccgttggatctca 753  T
182 tcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcatt 279  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
754 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaaattttgactcatt 853  T
280 aattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttca-ttttaagttctctt 354  Q
    ||||||| | ||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
854 aattatcattcaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctctt 929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 79 - 352
Target Start/End: Original strand, 35060 - 35336
Alignment:
79 gcaatcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatc 178  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||| ||||||||||||||||||||||||||||||  ||||||||    
35060 gcaatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggttgttggatc 35159  T
179 tcatcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactc 276  Q
    ||||||||||||||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||| |||||||||    
35160 tcatcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttatccaagttttgactc 35259  T
277 attaattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttca-ttttaagttctc 352  Q
    |||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||    
35260 attaattatcctccaattcccaaattaactccacacttatcgatgtccacctttttctccttcatttttaagttctc 35336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 89 - 354
Target Start/End: Complemental strand, 33045545 - 33045277
Alignment:
89 ttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 188  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
33045545 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttggatctcatcatttg 33045446  T
189 gctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcattaattatc 286  Q
    | ||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||    
33045445 gttaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatc 33045346  T
287 ctccaattcctaaattgactccacacttatctatgtccacctctttctccttca-ttttaagttctctt 354  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
33045345 ctccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctctt 33045277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 82 - 353
Target Start/End: Original strand, 10092512 - 10092772
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||    
10092512 atcatacttatatctaatctttgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaaacaagggaggccgttggatctca 10092611  T
182 tcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcatt 279  Q
    |||||||||||| ||||||||||||  ||              ||||| |||||||||||||||||||||||||  ||| ||||||| |||||| |||||    
10092612 tcatttggctaagcatgcatctcattctt--------------tcaaactttcaaatttgatgtatatttcctatgcacctatccaagttttgattcatt 10092697  T
280 aattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttca-ttttaagttctct 353  Q
    | ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
10092698 agttatcctccaatttccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctct 10092772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 89 - 220
Target Start/End: Original strand, 8976411 - 8976542
Alignment:
89 ttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 188  Q
    |||||||||||||||||||| |||||||||||  || |||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||||     
8976411 ttatatctaatctttgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaaaataagggagaccgttggatctcattattta 8976510  T
189 gctaaccatgcatctcatcatttgatctaatc 220  Q
    ||||| ||||||||||||| ||||||||||||    
8976511 gctaaacatgcatctcatcctttgatctaatc 8976542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 3065697 - 3065808
Alignment:
81 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctc 180  Q
    ||||||||||||||||||||||||||||||| ||||||||  |||||||| |||||| ||||||||||||||||| ||||||||||| ||||||||||||    
3065697 aatcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctcc-aaacaagggagaccgttggatctc 3065795  T
181 atcatttggctaa 193  Q
    |||||||||||||    
3065796 atcatttggctaa 3065808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 16246701 - 16246778
Alignment:
81 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaa 158  Q
    ||||||||||||||||||||||||| ||||||||||||||  |||||||| |||| | ||||||||||||||||||||    
16246701 aatcatacttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatcctaaatggttttggctccaaa 16246778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 30908483 - 30908414
Alignment:
89 ttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaa 158  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||||  ||||||||||||||||||||    
30908483 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaatctaaatggttttggctccaaa 30908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 4660295 - 4660222
Alignment:
83 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaa 157  Q
    |||||||||||| |||||||||||||||||||||||||  |||||||| |||| | |||| | ||||||||||||    
4660295 tcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 4660222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 30908233 - 30908174
Alignment:
285 tcctccaattcctaaattgactccacacttatctatgtccacctctttctccttcatttt 344  Q
    |||||||||||  | |||||||||||||||||| ||  ||||||||||||||| ||||||    
30908233 tcctccaattctcatattgactccacacttatcgatacccacctctttctcctccatttt 30908174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 82 - 354
Target Start/End: Original strand, 5657771 - 5658046
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    |||||||||||||||||||||||||||| ||||||||||  |||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||    
5657771 atcatacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatctca 5657870  T
182 tcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcatt 279  Q
    |||||||| ||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||| ||||||||||||    
5657871 tcatttggttaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttatccaagttttgactcatt 5657970  T
280 aattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttca-ttttaagttctctt 354  Q
    ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
5657971 aattatcctccaattcccaaattgactccacacttatcgatgcccacctctttctccttcatttttaagttctctt 5658046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 82 - 354
Target Start/End: Complemental strand, 14678142 - 14677868
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    |||||||||||||||||||||||||||||||||||||||  ||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
14678142 atcatacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 14678043  T
182 tcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcatt 279  Q
    |||||||||||| ||||||||||||| |||||||||||| |||||||| |||||||||| ||||||||||||||  ||||||||||| ||||||||||||    
14678042 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttaatgtatatttcctatgcacttatccaagttttgactcatt 14677943  T
280 aattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttca-ttttaagttctctt 354  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
14677942 aattatcatccaattcccaaattgactccacacttatc-atgtccacctctttctccttcatttttaagttctctt 14677868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 82 - 354
Target Start/End: Complemental strand, 31100993 - 31100718
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||  |||||| ||||||||||||||||||||||||||||||||||| |||||||    
31100993 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctca 31100894  T
182 tcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcatt 279  Q
    |||||||| ||| |||| |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||| ||||||||||||    
31100893 tcatttggttaagcatgtatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttatccaagttttgactcatt 31100794  T
280 aattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttca-ttttaagttctctt 354  Q
    ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
31100793 aattatcctccaattcccaaattgactccacacttatcgatgcccacctctttctccttcatttttaagttctctt 31100718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 82 - 255
Target Start/End: Complemental strand, 27541679 - 27541507
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||| |||||| ||||||| |||||||||||| ||||||| ||||||||||||||    
27541679 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctccaaa-caagggacgccgttggatctca 27541581  T
182 tcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta 255  Q
    |||||||||||| ||||||||||||| |||||||||||| || ||||| |||||||||||||||||||||||||    
27541580 tcatttggctaagcatgcatctcatcctttgatctaatctgaatcaaactttcaaatttgatgtatatttccta 27541507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 43519573 - 43519520
Alignment:
30 aaagtgaataaatggatgtttggggtttgaattttggcctatgcataaagcaat 83  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
43519573 aaagtgaataaatggatgtttgggatttgaattttggcctatgcataaagcaat 43519520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 23738657 - 23738731
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaa 157  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||| |||| | |||| | ||||||||||||    
23738657 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 23738731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 24788155 - 24788079
Alignment:
81 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaa 157  Q
    ||||||||||||||||||||||  ||||||||||||||||  |||||||| |||||| ||| | |||||||| ||||    
24788155 aatcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaattagttttggcgccaa 24788079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 33689415 - 33689343
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctcc 155  Q
    ||||||| |||||||||||||||||||||||||||||||  ||||| || |||| |||||| | ||||||||||    
33689415 atcatacctatatctaatctttgttaacattgctaatgactttgcagaccctaaccttaaa-gtttttggctcc 33689343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 342
Target Start/End: Complemental strand, 33689215 - 33689158
Alignment:
285 tcctccaattcctaaattgactccacacttatctatgtccacctctttctccttcatt 342  Q
    |||||||||| | | |||||||||||||||||| ||  ||||||||||||||||||||    
33689215 tcctccaatttccatattgactccacacttatccatacccacctctttctccttcatt 33689158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 8158458 - 8158497
Alignment:
79 gcaatcatacttatatctaatctttgttaacattgctaat 118  Q
    ||||||||||||||||||||| |||||||||| |||||||    
8158458 gcaatcatacttatatctaatttttgttaacaatgctaat 8158497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 82 - 344
Target Start/End: Complemental strand, 29863482 - 29863218
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    |||||||||||||||||||||||||||||||||| ||||  ||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||    
29863482 atcatacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 29863383  T
182 tcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcatt 279  Q
    |||||||||| | ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| ||  ||||||||||| ||||||||||||    
29863382 tcatttggctgagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcttatgcacttatccaagttttgactcatt 29863283  T
280 aattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttcatttt 344  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
29863282 aattatcctccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttt 29863218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 12506435 - 12506497
Alignment:
81 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaat 143  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||  |||||| |||||    
12506435 aatcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaat 12506497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 82 - 354
Target Start/End: Complemental strand, 11755 - 11480
Alignment:
82 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctca 181  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||    
11755 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatctca 11656  T
182 tcatttggctaaccatgcatctcatcatttgatctaatccgagtcaaattttcaaatttgatgtatatttccta--cacttatccaaattttgactcatt 279  Q
    |||||||| ||| ||||||||||||| |||||| ||||| |||||||| |||||||||||||||||||||||||  ||||||||||| ||||||||||||    
11655 tcatttggttaagcatgcatctcatcctttgatttaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttatccaagttttgactcatt 11556  T
280 aattatcctccaattcctaaattgactccacacttatctatgtccacctctttctccttca-ttttaagttctctt 354  Q
     |||||||||||||||| |||||||||||||||||||  ||| |||||||||||||||||| ||||||||||||||    
11555 cattatcctccaattcccaaattgactccacacttattgatgcccacctctttctccttcatttttaagttctctt 11480  T

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Target: scaffold0096 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 81 - 219
Target Start/End: Original strand, 27409 - 27546
Alignment:
81 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaaacaagggaggccgttggatctc 180  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||    
27409 aatcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaagggaggccgttggatctc 27507  T
181 atcatttggctaaccatgcatctcatcatttgatctaat 219  Q
    ||||||||||||| ||||||||||||| |||||||||||    
27508 atcatttggctaagcatgcatctcatcctttgatctaat 27546  T

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Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 50990911 - 50990983
Alignment:
86 tacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaaa 158  Q
    |||||||||||||||||||||||||||||| || |  |||||||| |||||| ||||||||||||||||||||    
50990911 tacttatatctaatctttgttaacattgctgataactttgcaaaccctaaacctaaatggttttggctccaaa 50990983  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 25223218 - 25223255
Alignment:
81 aatcatacttatatctaatctttgttaacattgctaat 118  Q
    |||||||||||||||||||||||||||||| |||||||    
25223218 aatcatacttatatctaatctttgttaacaatgctaat 25223255  T

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Target: scaffold0157 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 14042 - 13980
Alignment:
81 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaat 143  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||  |||||| |||||    
14042 aatcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaat 13980  T

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Target: scaffold0475 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 7585 - 7520
Alignment:
91 atatctaatctttgttaacattgctaatgaaattgcaaactctaaacttaaatggttttggctccaa 157  Q
    |||| |||||||||||||||||||||||||  |||||||| |||| | |||| | ||||||||||||    
7585 atatataatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 7520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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