View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10196_high_5 (Length: 336)

Name: NF10196_high_5
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10196_high_5
NF10196_high_5
[»] chr4 (2 HSPs)
chr4 (28-69)||(35884262-35884303)
chr4 (33-70)||(36832827-36832864)
[»] chr8 (7 HSPs)
chr8 (267-317)||(36643728-36643778)
chr8 (31-67)||(44912249-44912285)
chr8 (34-70)||(45183575-45183611)
chr8 (31-70)||(15546670-15546709)
chr8 (199-250)||(36849668-36849719)
chr8 (201-235)||(36644080-36644114)
chr8 (29-70)||(12929070-12929111)
[»] chr6 (1 HSPs)
chr6 (29-70)||(24093856-24093897)
[»] chr3 (1 HSPs)
chr3 (29-70)||(9596368-9596409)
[»] chr5 (3 HSPs)
chr5 (29-69)||(38307968-38308008)
chr5 (31-69)||(6963603-6963641)
chr5 (29-70)||(6662120-6662161)


Alignment Details
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 35884262 - 35884303
Alignment:
Q  28 gtcaaaaatagaaacaaattataaatttgatgtagaaaaagt 69  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  35884262 gtcaaaaatagaaataaattataaatttgatgtagaaaaagt 35884303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 36832827 - 36832864
Alignment:
Q  33 aaatagaaacaaattataaatttgatgtagaaaaagtt 70  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  36832827 aaatagaaataaattataaattttatgtagaaaaagtt 36832864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 36643778 - 36643728
Alignment:
Q  267 ataactttcttgaacatgatatgctagaactgatcacaaagatataccaaa 317  Q
    |||||| |||||||||||||||||||||| ||||||||||| |||| ||||    
T  36643778 ataactatcttgaacatgatatgctagaaatgatcacaaagctatatcaaa 36643728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 44912285 - 44912249
Alignment:
Q  31 aaaaatagaaacaaattataaatttgatgtagaaaaa 67  Q
    ||||||||||| |||||||||||||||||||||||||    
T  44912285 aaaaatagaaataaattataaatttgatgtagaaaaa 44912249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 45183575 - 45183611
Alignment:
Q  34 aatagaaacaaattataaatttgatgtagaaaaagtt 70  Q
    |||||||| ||||||||||||||||||||||||||||    
T  45183575 aatagaaataaattataaatttgatgtagaaaaagtt 45183611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 15546670 - 15546709
Alignment:
Q  31 aaaaatagaaacaaattataaatttgatgtagaaaaagtt 70  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  15546670 aaaaatagaaataaattataaatttgatgcagaaaaagtt 15546709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 36849668 - 36849719
Alignment:
Q  199 tattaatgcaatatcaaaatccacaatcatatgctcagtgttgaccaaataa 250  Q
    ||||||| |||||||||||||||||||| ||||| |||  ||||||||||||    
T  36849668 tattaatacaatatcaaaatccacaatcctatgcccagccttgaccaaataa 36849719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 36644114 - 36644080
Alignment:
Q  201 ttaatgcaatatcaaaatccacaatcatatgctca 235  Q
    ||||||||||||||||||||||||||||| |||||    
T  36644114 ttaatgcaatatcaaaatccacaatcataagctca 36644080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 12929111 - 12929070
Alignment:
Q  29 tcaaaaatagaaacaaattataaatttgatgtagaaaaagtt 70  Q
    ||||||||| ||| ||||||||||||||||| ||||||||||    
T  12929111 tcaaaaataaaaataaattataaatttgatgcagaaaaagtt 12929070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 24093897 - 24093856
Alignment:
Q  29 tcaaaaatagaaacaaattataaatttgatgtagaaaaagtt 70  Q
    |||||||||||||  |||||||||||||||||||||||||||    
T  24093897 tcaaaaatagaaatgaattataaatttgatgtagaaaaagtt 24093856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 9596409 - 9596368
Alignment:
Q  29 tcaaaaatagaaacaaattataaatttgatgtagaaaaagtt 70  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  9596409 tcaaaaatagaaataaattataaatttgatgtggaaaaagtt 9596368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 38308008 - 38307968
Alignment:
Q  29 tcaaaaatagaaacaaattataaatttgatgtagaaaaagt 69  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  38308008 tcaaaaatagaaataaattatgaatttgatgtagaaaaagt 38307968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 6963603 - 6963641
Alignment:
Q  31 aaaaatagaaacaaattataaatttgatgtagaaaaagt 69  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  6963603 aaaaatagaaataaattataaatttaatgtagaaaaagt 6963641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 6662161 - 6662120
Alignment:
Q  29 tcaaaaatagaaacaaattataaatttgatgtagaaaaagtt 70  Q
    |||||||| |||| || |||||||||||||||||||||||||    
T  6662161 tcaaaaattgaaataatttataaatttgatgtagaaaaagtt 6662120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University