View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10196_high_8 (Length: 310)

Name: NF10196_high_8
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10196_high_8
NF10196_high_8
[»] chr8 (5 HSPs)
chr8 (15-294)||(30199261-30199541)
chr8 (121-165)||(132612-132655)
chr8 (38-97)||(32731374-32731434)
chr8 (121-167)||(8137540-8137586)
chr8 (121-167)||(30199621-30199667)
[»] chr5 (3 HSPs)
chr5 (38-167)||(16287509-16287641)
chr5 (121-167)||(3023757-3023803)
chr5 (38-102)||(20732681-20732745)
[»] chr2 (7 HSPs)
chr2 (38-102)||(11919736-11919801)
chr2 (121-167)||(9775389-9775435)
chr2 (121-167)||(22698846-22698892)
chr2 (121-167)||(22699082-22699128)
chr2 (121-167)||(35935369-35935415)
chr2 (38-177)||(35844731-35844872)
chr2 (121-169)||(25547797-25547845)
[»] chr7 (1 HSPs)
chr7 (38-102)||(38722953-38723018)
[»] chr3 (3 HSPs)
chr3 (38-166)||(24312814-24312944)
chr3 (116-164)||(48743134-48743182)
chr3 (113-165)||(53195557-53195609)
[»] chr4 (2 HSPs)
chr4 (38-95)||(47645513-47645571)
chr4 (38-102)||(14612287-14612352)
[»] scaffold0005 (1 HSPs)
scaffold0005 (38-102)||(205025-205090)
[»] chr1 (1 HSPs)
chr1 (38-102)||(23279743-23279808)
[»] scaffold0173 (1 HSPs)
scaffold0173 (121-166)||(22811-22856)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 30199541 - 30199261
Alignment:
Q  15 gggtcaaaatcacaacnnnnnnngtaaagataagggtgcaaaagagcatattttcccaa-catggcaaaattagggcgtcaaaaatgcannnnnnngtca 113  Q
    ||||||||||||||||       |||||||||||||   ||||||||||||||||| || ||||||||||||| ||||| |||||||||        | |    
T  30199541 gggtcaaaatcacaactttttttgtaaagataaggggttaaaagagcatattttcctaaacatggcaaaattaaggcgtgaaaaatgcatttttttatta 30199442  T
Q  114 ggggactaaaattgctacgacggcaaatataaggggtcaaaaatgcatttaagcttct-attattaaagtattacagttttttggtnnnnnnnnggtatt 212  Q
    ||||||||||||||||||||||||||| ||| |||||||||| || |||||| ||| | |||||| ||||||||||||||||||||        ||||||    
T  30199441 ggggactaaaattgctacgacggcaaacata-ggggtcaaaagtgtatttaaactttttattattgaagtattacagttttttggtcaaaaaaaggtatt 30199343  T
Q  213 atggttttatcttttcttttcgtcgttggcttcgctatggatagatcaactgaatttaacttctgctcaaaaatctccaatc 294  Q
    | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30199342 acggttttatcttttcttttcgtcgttgccttcgctatggatagatcaactgaatttaacttctgctcaaaaatctccaatc 30199261  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 132612 - 132655
Alignment:
Q  121 aaaattgctacgacggcaaatataaggggtcaaaaatgcatttaa 165  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  132612 aaaattgctacgacggcaaacata-ggggtcaaaaatgcatttaa 132655  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 32731434 - 32731374
Alignment:
Q  38 gtaaagataagggtgcaaaagagcatattttcc-caacatggcaaaattagggcgtcaaaa 97  Q
    |||||||||||||  ||||||||||||||||||  ||||||| |||||||||| |||||||    
T  32731434 gtaaagataaggggccaaaagagcatattttcctaaacatggaaaaattagggggtcaaaa 32731374  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 8137586 - 8137540
Alignment:
Q  121 aaaattgctacgacggcaaatataaggggtcaaaaatgcatttaagc 167  Q
    |||||||||| ||||||||| |||||||| ||||| |||||||||||    
T  8137586 aaaattgctatgacggcaaacataaggggccaaaagtgcatttaagc 8137540  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 30199621 - 30199667
Alignment:
Q  121 aaaattgctacgacggcaaatataaggggtcaaaaatgcatttaagc 167  Q
    |||||||||||||||||||| |||| || |||||| |||||||||||    
T  30199621 aaaattgctacgacggcaaacataaaggatcaaaagtgcatttaagc 30199667  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 167
Target Start/End: Complemental strand, 16287641 - 16287509
Alignment:
Q  38 gtaaagataagggtgcaaaagagcatattttcccaa-catggcaaaattagggcgtcaaaaatgcannnnnnn--gtcaggggactaaaattgctacgac 134  Q
    |||||||||||||  |||||||||||||||| | || |||||||||||||||| ||||||| ||||         || ||||| ||||||||||||||||    
T  16287641 gtaaagataagggaccaaaagagcatatttttctaaacatggcaaaattagggggtcaaaattgcatttttttttgttagggggctaaaattgctacgac 16287542  T
Q  135 ggcaaatataaggggtcaaaaatgcatttaagc 167  Q
    |||||| ||| | ||||||||||||||||||||    
T  16287541 ggcaaacataggaggtcaaaaatgcatttaagc 16287509  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 3023757 - 3023803
Alignment:
Q  121 aaaattgctacgacggcaaatataaggggtcaaaaatgcatttaagc 167  Q
    ||||||||||||||| |||| |||| ||| |||||||||||||||||    
T  3023757 aaaattgctacgacgacaaacataaagggccaaaaatgcatttaagc 3023803  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 20732681 - 20732745
Alignment:
Q  38 gtaaagataagggtgcaaaagagcatattttcccaa-catggcaaaattagggcgtcaaaaatgca 102  Q
    |||||||||||||  ||||||||||||||| || || |||||||||||||||| ||||||| ||||    
T  20732681 gtaaagataagggc-caaaagagcatatttccctaaacatggcaaaattagggggtcaaaattgca 20732745  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 11919801 - 11919736
Alignment:
Q  38 gtaaagataagggtgcaaaagagcatattttcc-caacatggcaaaattagggcgtcaaaaatgca 102  Q
    ||||||||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||||    
T  11919801 gtaaagataagggggcaaaagagcatattttcctaaacatggcaaaattagggggtcaaaattgca 11919736  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 9775435 - 9775389
Alignment:
Q  121 aaaattgctacgacggcaaatataaggggtcaaaaatgcatttaagc 167  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  9775435 aaaattgctacgacggcaaacataggggatcaaaaatgcatttaagc 9775389  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 22698892 - 22698846
Alignment:
Q  121 aaaattgctacgacggcaaatataaggggtcaaaaatgcatttaagc 167  Q
    |||||||||||||||||||| ||| ||||||||||||| ||||||||    
T  22698892 aaaattgctacgacggcaaacatagggggtcaaaaatgtatttaagc 22698846  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 22699082 - 22699128
Alignment:
Q  121 aaaattgctacgacggcaaatataaggggtcaaaaatgcatttaagc 167  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||||    
T  22699082 aaaattgctacgacggcaaacatagggggtcaaaagtgcatttaagc 22699128  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 35935415 - 35935369
Alignment:
Q  121 aaaattgctacgacggcaaatataaggggtcaaaaatgcatttaagc 167  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||||    
T  35935415 aaaattgctacgacggcaaatatagggggccaaaagtgcatttaagc 35935369  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 177
Target Start/End: Complemental strand, 35844872 - 35844731
Alignment:
Q  38 gtaaagataagggtgcaaaagagcata-ttttcccaacatggcaaaattagggcgtcaaaaatgca-nnnnnnngtcaggggactaaaattgctacgacg 135  Q
    |||||||||||||  |||||||||||| |||||  |||||| ||||||||||| ||||||| ||||        || ||||| | ||||||||||||| |    
T  35844872 gtaaagataaggggccaaaagagcatatttttctaaacatgacaaaattagggggtcaaaattgcattttttttgttagggggccaaaattgctacgatg 35844773  T
Q  136 gcaaatataaggggtcaaaaatgcatttaagcttctattatt 177  Q
    ||||| ||| |||| ||||| | ||||||||| | |||||||    
T  35844772 gcaaacatagggggccaaaacttcatttaagcctttattatt 35844731  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 25547845 - 25547797
Alignment:
Q  121 aaaattgctacgacggcaaatataaggggtcaaaaatgcatttaagctt 169  Q
    |||||||||||||||||||| |||  || |||||| |||||||||||||    
T  25547845 aaaattgctacgacggcaaacatagaggatcaaaagtgcatttaagctt 25547797  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 38722953 - 38723018
Alignment:
Q  38 gtaaagataagggtgcaaaagagcatattttcc-caacatggcaaaattagggcgtcaaaaatgca 102  Q
    |||||||||||||| ||||||||||||||| ||  |||||||||||||||||| ||||||| ||||    
T  38722953 gtaaagataagggtccaaaagagcatatttccctaaacatggcaaaattagggggtcaaaattgca 38723018  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 24312814 - 24312944
Alignment:
Q  38 gtaaagataagggtgcaaaagagcatattttcc-caacatggcaaaattagggcgtcaaaaatgca-nnnnnnngtcaggggactaaaattgctacgacg 135  Q
    |||||||||| || |||||||||||||||||||  ||||||||||||||| || ||||||| ||||        || ||||| | |||||||||||||||    
T  24312814 gtaaagataaaggggcaaaagagcatattttcctaaacatggcaaaattaaggggtcaaaattgcattgtttttgttagggggccaaaattgctacgacg 24312913  T
Q  136 gcaaatataaggggtcaaaaatgcatttaag 166  Q
     |||| ||| ||||  |||||||||||||||    
T  24312914 acaaacatagggggcaaaaaatgcatttaag 24312944  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 48743182 - 48743134
Alignment:
Q  116 ggactaaaattgctacgacggcaaatataaggggtcaaaaatgcattta 164  Q
    |||| |||||||||||||||||||| ||| |||| ||||| ||||||||    
T  48743182 ggaccaaaattgctacgacggcaaacatagggggccaaaagtgcattta 48743134  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 53195609 - 53195557
Alignment:
Q  113 aggggactaaaattgctacgacggcaaatataaggggtcaaaaatgcatttaa 165  Q
    ||||||| ||||||||||| | ||||||||||| ||| ||||| |||||||||    
T  53195609 aggggaccaaaattgctaccatggcaaatataaagggccaaaagtgcatttaa 53195557  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 47645571 - 47645513
Alignment:
Q  38 gtaaagataagggtgcaaaagagcatattttcc-caacatggcaaaattagggcgtcaa 95  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||||||||| |||||    
T  47645571 gtaaagataaggggccaaaagagcatattttcctaaacatggcaaaattagggggtcaa 47645513  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 14612287 - 14612352
Alignment:
Q  38 gtaaagataagggtgcaaaagagcatattttcccaa-catggcaaaattagggcgtcaaaaatgca 102  Q
    |||||||||||||  ||||||||||||||| || || |||||||||||||||| ||||||| ||||    
T  14612287 gtaaagataaggggccaaaagagcatatttccctaaacatggcaaaattagggggtcaaaattgca 14612352  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 205090 - 205025
Alignment:
Q  38 gtaaagataagggtgcaaaagagcatattttcccaa-catggcaaaattagggcgtcaaaaatgca 102  Q
    |||||||||||||  ||||||||||||||| || || |||||||||||||||| ||||||| ||||    
T  205090 gtaaagataaggggccaaaagagcatatttccctaaacatggcaaaattagggggtcaaaattgca 205025  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 23279743 - 23279808
Alignment:
Q  38 gtaaagataagggtgcaaaagagcatattttcc-caacatggcaaaattagggcgtcaaaaatgca 102  Q
    |||||||||| || |||||||||||||||||||  ||||||||||||||| || ||||||| ||||    
T  23279743 gtaaagataaaggggcaaaagagcatattttcctaaacatggcaaaattaaggggtcaaaattgca 23279808  T

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Target: scaffold0173 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 22856 - 22811
Alignment:
Q  121 aaaattgctacgacggcaaatataaggggtcaaaaatgcatttaag 166  Q
    ||||||||||||| |||||| |||||||| ||||| ||||||||||    
T  22856 aaaattgctacgatggcaaacataaggggccaaaagtgcatttaag 22811  T

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