View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10196_low_12 (Length: 350)
Name: NF10196_low_12
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 1597472 - 1597139
Alignment:
| Q |
1 |
gaaggttaccctatcgacatggtcaggattagatggacgaggccgatgctcaaccaaccaaccttcaggaagcttgaatgacagctagaccacaaaataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1597472 |
gaaggttaccctatcgacatggtcaggattagatggacgaggccgatgctcaaccaaccaaccttcaggaagcttgaatgacagctagaccacaaaataa |
1597373 |
T |
|
| Q |
101 |
tgcatcagatacgtaacaaacagaatacatcaatacttccaaagatcagatacataacacattgtcctcttcattcatttcccaaatcaagcatgattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1597372 |
tgcatcagatacgtaacaaacagaatacatcaatacttccaaagatcagatacataacacattgtcctcttcattcatttcccaaatcaagcatgattat |
1597273 |
T |
|
| Q |
201 |
caagcaaaacaggatacaccgatacttccaaagatcactcagcataaaaaacataaaatagtattaaatgaatttcctaattgcttcaatttcatacatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1597272 |
caagcaaaacaggatacaccgatacttccaaagatcaatcagcataaaaaacataaaatagtattaaatgaatttcttaattgcttcaatttcatacatt |
1597173 |
T |
|
| Q |
301 |
ctatatcagaaaacattttcatttgtgatgaaac |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1597172 |
ctatatcagaaaacattttcatttgtgatgaaac |
1597139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 47 - 250
Target Start/End: Complemental strand, 555482 - 555278
Alignment:
| Q |
47 |
tgctcaaccaaccaaccttcaggaagcttgaatgacagctagaccacaaaataatgcatcagatacgtaacaaaca-gaatacatcaatacttccaaaga |
145 |
Q |
| |
|
||||||||||||||||| || ||||||||||| |||||||| ||||||||| | |||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
555482 |
tgctcaaccaaccaaccatcgggaagcttgaacgacagctaaaccacaaaaaagtgcatcagatacataacaaaattgaatacatcaatacttccaaaga |
555383 |
T |
|
| Q |
146 |
tcagatacataacacattgtcctcttcattcatttcccaaatcaagcatgattatcaagcaaaacaggatacaccgatacttccaaagatcactcagcat |
245 |
Q |
| |
|
| ||||| |||||||||||||| |||||| |||||| ||||||||||| ||| || ||||||||||||||||| ||||||| |||| | ||||||| || |
|
|
| T |
555382 |
ttagatatgtaacacattgtccttttcattaatttccaaaatcaagcataattctcgagcaaaacaggatacactgatactttcaaataccactcagaat |
555283 |
T |
|
| Q |
246 |
aaaaa |
250 |
Q |
| |
|
||||| |
|
|
| T |
555282 |
aaaaa |
555278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 118 - 253
Target Start/End: Original strand, 41225593 - 41225728
Alignment:
| Q |
118 |
aaacagaatacatcaatacttccaaagatcagatacataacacattgtcctcttcattcatttcccaaatcaagcatgattatcaagcaaaacaggatac |
217 |
Q |
| |
|
||||||||| ||||| |||||| | |||||| ||||| |||||| ||||||||||||||||||| ||| |||||||| ||| | ||||||| ||||||| |
|
|
| T |
41225593 |
aaacagaatgcatcagtacttctacagatcatatacacaacacactgtcctcttcattcatttctcaagtcaagcataattctagagcaaaaaaggatac |
41225692 |
T |
|
| Q |
218 |
accgatacttccaaagatcactcagcataaaaaaca |
253 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
41225693 |
accaatacttccaaagatcactcaccataaaaaaca |
41225728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 41225504 - 41225548
Alignment:
| Q |
41 |
ggccgatgctcaaccaaccaaccttcaggaagcttgaatgacagc |
85 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| |||||| |
|
|
| T |
41225504 |
ggccgatgctcaaccaaccaaccatcgggaagcttgaacgacagc |
41225548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 29628926 - 29628965
Alignment:
| Q |
202 |
aagcaaaacaggatacaccgatacttccaaagatcactca |
241 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
29628926 |
aagcaaaacaggatacatcaatacttccaaagatcactca |
29628965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University