View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10196_low_16 (Length: 314)
Name: NF10196_low_16
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 54775436 - 54775136
Alignment:
| Q |
1 |
catcattctcagtgcagtatccagcaagnnnnnnncatcgttggtcatatgaatcgtaaataacccattaaccaaccttagtcgaaggttgtttggatgt |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54775436 |
catcattctcagtgcagtatccagcaagaaaaaaacatcgttggtcatatgaatcgtaaataacccattaaccaaccttagtcaaaggttgtttggatgt |
54775337 |
T |
|
| Q |
101 |
ctcttccaaagatcttccctcctcaacatcgtcaactattacaagacctcatagaatgtactcacaacaaaaacatcctcaaaggtcgaacacttcacgc |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775336 |
ctcttccaaagatcttccctccgcaacatcgtcaactattacaagacctcatagaatgtactcacaacaaaaacatcctcaaaggtcgaacacttcacgc |
54775237 |
T |
|
| Q |
201 |
tcgcattctaaaaactggttccatctcttccatttacgtcaccaacactttcctcaatctctacgccaaaaccaatcacttatcacacgctttaaccctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775236 |
tcgcattctaaaaactggttccatctcttccatttacgtcaccaacactttcctcaatctctacgccaaaaccaatcacttatcacacgctttaaccctc |
54775137 |
T |
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| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
54775136 |
t |
54775136 |
T |
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