View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10196_low_18 (Length: 292)
Name: NF10196_low_18
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 84 - 275
Target Start/End: Complemental strand, 9868799 - 9868590
Alignment:
| Q |
84 |
aatgagtcatttaatttcagttctgcaacatcatatacaaattgccaataaaaatcacatttgttattcctata----------------cctcacatac |
167 |
Q |
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| T |
9868799 |
aatgagtcatttaatttcagttctgcaacatcatatacaaattgccaataaaaatcacatttgttattcctatataccatagattttatacctcacatac |
9868700 |
T |
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| Q |
168 |
gacataattatgatgtgttttt--agtggaacgtattcaattacaatgtgttctttccttaaagatgtaatcaatcattaacctaattttcgactcatta |
265 |
Q |
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| T |
9868699 |
gacataattatgatgtgtttttttagtggaacatatttaattacaatgtgttctttccttaaagatgtaatcaatcattaacctaatgttcgactcatta |
9868600 |
T |
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| Q |
266 |
tgataagagg |
275 |
Q |
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| T |
9868599 |
tggtaagagg |
9868590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 9871992 - 9871920
Alignment:
| Q |
87 |
gagtcatttaatttcagttctgcaacatcatatacaaattgccaataaaaatcacatttgttattcctatacc |
159 |
Q |
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| T |
9871992 |
gagtcatttaatttcggttgcgcaagagcatatacaaactgccaataaaaatcacatttgttattcctatacc |
9871920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 9881044 - 9880961
Alignment:
| Q |
171 |
ataattatgatgtgttttt--agtggaacgtattca--attacaatgtgttctttccttaaagatgtaatcaatcattaaccta |
250 |
Q |
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| T |
9881044 |
ataactatgatgtgtttttttagtggaacatatttataattacaatgtgttctttccttaaagatgtaattaatcattaaccta |
9880961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 9881077 - 9881041
Alignment:
| Q |
98 |
tttcagttctgcaacatcatatacaaattgccaataa |
134 |
Q |
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| T |
9881077 |
tttcagttctgcaacatcatatataaattgccaataa |
9881041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 9967278 - 9967218
Alignment:
| Q |
84 |
aatgagtcatttaatttcagttctgcaacatcatatacaaattgccaataaaaatcacatt |
144 |
Q |
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||||||| ||||||||||||| |||||||| | ||||||||||| || |||||||||||| |
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| T |
9967278 |
aatgagttgtttaatttcagttatgcaacattagatacaaattgcaaagaaaaatcacatt |
9967218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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