View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10196_low_2 (Length: 526)

Name: NF10196_low_2
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10196_low_2
NF10196_low_2
[»] chr2 (3 HSPs)
chr2 (30-492)||(7803320-7803776)
chr2 (326-399)||(4690285-4690358)
chr2 (330-378)||(18570971-18571019)
[»] chr1 (1 HSPs)
chr1 (339-441)||(16164264-16164366)
[»] chr8 (2 HSPs)
chr8 (339-442)||(11927034-11927137)
chr8 (337-437)||(1925994-1926093)
[»] chr3 (4 HSPs)
chr3 (330-377)||(12704670-12704717)
chr3 (320-373)||(7948947-7949001)
chr3 (332-393)||(11093571-11093632)
chr3 (339-411)||(16192729-16192801)
[»] chr4 (1 HSPs)
chr4 (339-421)||(38148694-38148776)
[»] chr7 (3 HSPs)
chr7 (332-399)||(1885574-1885641)
chr7 (360-430)||(6630872-6630942)
chr7 (332-441)||(38134355-38134464)
[»] chr5 (2 HSPs)
chr5 (332-393)||(38749560-38749621)
chr5 (339-399)||(22423803-22423863)
[»] chr6 (1 HSPs)
chr6 (339-391)||(24115846-24115898)


Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 30 - 492
Target Start/End: Complemental strand, 7803776 - 7803320
Alignment:
Q  30 gagagatgaatgaaactaaattaaaaaatattattaaaatgagtgaagtgattacaaagagtaatatcaagcctttatataagctaactactactagtaa 129  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  7803776 gagaaatgaatgaaactaaattaaaaaatattattaaaatgagtgaagtgattacaaagagtaatatcaagcctttatataagctaactgttactagtaa 7803677  T
Q  130 taaaccaactagccagaaagtgttcctaacacttccagctaaacatatcaaaacaaagagaaatgtgatagaaatacatcagctaaaaatgccatgaagg 229  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7803676 ttaaccaactagccagaaagtgttcctaacacttccagctaaacatatcaaaacaaagagaaatgtgatagaaatacatcagctaaaaatgccatgaagg 7803577  T
Q  230 tagtataagccaacatatcaaagtcataaatcataatgcttaaccacttgatagaagctacaaagcatgtactcagacaccaaacatgatacagacatac 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  7803576 tagtataagccaacatatcaaagtcataaatcataatgcttaaccacttgatagaagctacgaagcatgtactcagacaccaaacatgataaagacatac 7803477  T
Q  330 caacacggataatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgttagacacaacacgtatccgacatcaagaca 429  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||      ||||||||||||||||||||||| ||||    
T  7803476 caacaccgataatagtttgaaaagatgacataattcaatataatcatatacgttggtgtcgtgttg------gacacaacacgtatccgacatcaggaca 7803383  T
Q  430 cgcttaatccgatagaagcaagtacaccaatcaatgcttaaccagcataagacagaaactaac 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7803382 cgcttaatccgatagaagcaagtacaccaatcaatgcttaaccagcataagacagaaactaac 7803320  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 4690285 - 4690358
Alignment:
Q  326 ataccaacacggataatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgt 399  Q
    |||| ||||| ||||||| ||||| || || |||||||| |||| |||||||||||||  ||||||||| ||||    
T  4690285 atacaaacactgataataatttgagaaaataacataatttaatacaatcatatatgttagtgtcgtgttcgtgt 4690358  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 378
Target Start/End: Original strand, 18570971 - 18571019
Alignment:
Q  330 caacacggataatagtttgaaaagatgacataattcaatataatcatat 378  Q
    |||||| ||||||| ||||| || ||||||||||||||| |||||||||    
T  18570971 caacaccgataataatttgagaaaatgacataattcaatgtaatcatat 18571019  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 339 - 441
Target Start/End: Complemental strand, 16164366 - 16164264
Alignment:
Q  339 taatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgttagacacaacacgtatccgacatcaagacacgcttaatc 438  Q
    ||||| |||||||| || |||||||| ||| |||| |||| |||   ||||||||||||||| ||| |||||||| ||||||| || ||||||| |||||    
T  16164366 taataatttgaaaaaatcacataatttaatgtaattatatgtgtcattgtcgtgttggtgttggacgcaacacgtgtccgacaccaggacacgcctaatc 16164267  T
Q  439 cga 441  Q
    |||    
T  16164266 cga 16164264  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 442
Target Start/End: Complemental strand, 11927137 - 11927034
Alignment:
Q  339 taatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgttagacacaacacgtatccgacatcaagacacgcttaatc 438  Q
    ||||| ||||| || || |||||||||| | |||| |||| ||| | |||||||||||||| | |||| ||| |||||| ||||| |||||||| |||||    
T  11927137 taataatttgataaaatcacataattcagtgtaattatatgtgtcggtgtcgtgttggtgtcatacacgacatgtatccaacatcgagacacgcctaatc 11927038  T
Q  439 cgat 442  Q
    ||||    
T  11927037 cgat 11927034  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 437
Target Start/End: Original strand, 1925994 - 1926093
Alignment:
Q  337 gataatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgttagacacaacacgtatccgacatcaagacacgcttaa 436  Q
    |||||||||||||||| | ||||||||||||| ||||||||||||| | | | |||| |||   |||||| | |||||||||||| | |||||| |||||    
T  1925994 gataatagtttgaaaa-aggacataattcaatgtaatcatatatgtcggtatagtgtcggtaccagacacgatacgtatccgacaccgagacacacttaa 1926092  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 377
Target Start/End: Complemental strand, 12704717 - 12704670
Alignment:
Q  330 caacacggataatagtttgaaaagatgacataattcaatataatcata 377  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  12704717 caacacggataataatttgaaaaaatgacataattcaatgtaatcata 12704670  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 7948947 - 7949001
Alignment:
Q  320 acagacataccaacacggataatagtttga-aaagatgacataattcaatataat 373  Q
    ||||||||| |||||| ||||||||||||| ||| ||||||||||||||| ||||    
T  7948947 acagacatatcaacaccgataatagtttgagaaaaatgacataattcaatgtaat 7949001  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 393
Target Start/End: Original strand, 11093571 - 11093632
Alignment:
Q  332 acacggataatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgt 393  Q
    |||| ||||||| |||||||| ||||||||||||||  |||||| || ||||| ||||||||    
T  11093571 acactgataataatttgaaaaaatgacataattcaaagtaatcagatgtgttggtgtcgtgt 11093632  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 411
Target Start/End: Complemental strand, 16192801 - 16192729
Alignment:
Q  339 taatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgttagacacaacac 411  Q
    ||||| ||||| || || |||||||||| | |||| |||| |||||||||||||| ||||| |||||| ||||    
T  16192801 taataatttgagaaaataacataattcagtgtaattatatgtgttgatgtcgtgtcggtgtcagacacgacac 16192729  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 421
Target Start/End: Complemental strand, 38148776 - 38148694
Alignment:
Q  339 taatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgttagacacaacacgtatccgaca 421  Q
    ||||||||||| || || |||||||||| | ||||  || |||| ||||||||||||||||| ||||| ||||||||| ||||    
T  38148776 taatagtttgagaaaatcacataattcagtgtaattttaaatgtcgatgtcgtgttggtgttggacacgacacgtatctgaca 38148694  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 399
Target Start/End: Original strand, 1885574 - 1885641
Alignment:
Q  332 acacggataatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgt 399  Q
    |||||||||| | |||||||| ||||||||||||||| |||||| |  ||| | ||||||||||||||    
T  1885574 acacggataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgt 1885641  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 430
Target Start/End: Complemental strand, 6630942 - 6630872
Alignment:
Q  360 taattcaatataatcatatatgttgatgtcgtgttggtgttagacacaacacgtatccgacatcaagacac 430  Q
    ||||||| | |||| |||| ||| ||||||||||||||||  ||||||||||||  |||||| ||||||||    
T  6630942 taattcagtgtaattatatgtgtcgatgtcgtgttggtgtcggacacaacacgtgcccgacaccaagacac 6630872  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 441
Target Start/End: Complemental strand, 38134464 - 38134355
Alignment:
Q  332 acacggataatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgttagacacaacacgtatccgacatcaagacacg 431  Q
    |||| ||||||| ||||| || ||||||||||||||| ||||||||| ||| | | || ||| |||||| ||| | | | |||| |||||||  ||||||    
T  38134464 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcggtctcatgtgggtgttggactcgataagtattcgacatcgggacacg 38134365  T
Q  432 cttaatccga 441  Q
    | ||||||||    
T  38134364 cctaatccga 38134355  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 393
Target Start/End: Complemental strand, 38749621 - 38749560
Alignment:
Q  332 acacggataatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgt 393  Q
    |||| ||||||| |||||||| ||||||||||||||| |||| |||| ||||| ||| ||||    
T  38749621 acaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgt 38749560  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 22423863 - 22423803
Alignment:
Q  339 taatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgt 399  Q
    ||||| ||||| || || ||||||||||||||||| |||||||| | |||||||| |||||    
T  22423863 taataatttgagaaaatcacataattcaatataattatatatgtcggtgtcgtgtcggtgt 22423803  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 24115898 - 24115846
Alignment:
Q  339 taatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgt 391  Q
    ||||| ||| |||| || ||||||||||||||||| |||||||||| ||||||    
T  24115898 taataatttcaaaaaatcacataattcaatataattatatatgttggtgtcgt 24115846  T

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