View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10196_low_20 (Length: 282)
Name: NF10196_low_20
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 42603342 - 42603183
Alignment:
| Q |
18 |
acatcaagctaaataaagaaaaaacactaactaagaagcatggtaaaacactcaatgagatttgtcaaccagtaatgaaaatcaaaatttaatttactaa |
117 |
Q |
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| T |
42603342 |
acatcaagctaaataaagaaaaaacactaactaagaagcatggtaaaacactcaatgagatttgtcaaccagtaatgaaaatcaaaatttaatttactaa |
42603243 |
T |
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| Q |
118 |
tatttgcttgtaaccatctaaaagaagaaagcttcacgttatccactcagtgacaaccat |
177 |
Q |
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| T |
42603242 |
tatttgcttgcaaccatctaaaagaagaaagcttcacgttatccacccagtgacaaccat |
42603183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 186 - 271
Target Start/End: Complemental strand, 42603139 - 42603054
Alignment:
| Q |
186 |
tatgtaaaattgtgacgaggctttggttgttgtttgtaccgtgggttgaatgaattattgtgcagctttcaaatcaatactttcat |
271 |
Q |
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| T |
42603139 |
tatgtaaaattgtgacgaggctttggtttttgtttgtaccgtgggttgaatgaattattgtgcagctttcaaatcaatactttcat |
42603054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 30778340 - 30778402
Alignment:
| Q |
42 |
cactaactaagaagcatggtaaaacactcaatgagatttgtcaaccagtaatgaaaatcaaaa |
104 |
Q |
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| T |
30778340 |
cactaactaggaatcatggtaaaacactcaatgagatttgtccaccgatgatgaaaatcaaaa |
30778402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 17413743 - 17413827
Alignment:
| Q |
61 |
taaaacactcaatgagatttgtcaaccagtaatgaaaatcaaaatttaatttactaatatttgcttgtaaccatctaaaagaaga |
145 |
Q |
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| T |
17413743 |
taaaacactaaatgagattagtccactagtgatccaaatcaaatgttaagttactaatatttgcttgtaaccatatgaaagaaga |
17413827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 28640476 - 28640412
Alignment:
| Q |
90 |
taatgaaaatcaaaatttaatttactaatatttgcttgtaaccatctaaaagaagaaagcttcac |
154 |
Q |
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| T |
28640476 |
taatgaaaatcgaaagttaagttactattttttgcttgtaaccacctgcaagaggaaagcttcac |
28640412 |
T |
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