View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10196_low_21 (Length: 272)
Name: NF10196_low_21
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 8803779 - 8804028
Alignment:
| Q |
2 |
ttaacgaaagttaagcatgaaattgtttgaaggacgaatgctcagcatgattaaaaattactattaatttacgcaaatgaaagcatataatatgtggagc |
101 |
Q |
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| T |
8803779 |
ttaacgaaagttaagcatgaaattttttgaaggacgaatgttcagcatgattaaaaattactattaatttacgcaaatgaaagcatataattagtggagc |
8803878 |
T |
|
| Q |
102 |
caaaatcccacactaacgaaaccaatgtggtnnnnnnnnnnncaaggaaaagagaaagaggggttaagaaacccatctgtgtgaaggtgaaggtttcaaa |
201 |
Q |
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| T |
8803879 |
caaa-tcccacactaacgaaaccaatgtggtaaaaaaaa---caaggaaaagagaaagaggggttaagaaacccatctctgtgaaggtgaaggtttcaaa |
8803974 |
T |
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| Q |
202 |
gaagaatggtaaatcaagcaatagtttgccttgattgacacacatgacctccct |
255 |
Q |
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| T |
8803975 |
gaagaatggtaaatcaagcaatagtttgccttgattgacacacatgacctccct |
8804028 |
T |
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