View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10196_low_22 (Length: 270)

Name: NF10196_low_22
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10196_low_22
NF10196_low_22
[»] chr4 (1 HSPs)
chr4 (1-265)||(11377878-11378142)
[»] chr5 (2 HSPs)
chr5 (3-81)||(17412894-17412972)
chr5 (32-141)||(22432515-22432623)
[»] chr6 (1 HSPs)
chr6 (29-116)||(17522798-17522885)
[»] chr2 (3 HSPs)
chr2 (30-116)||(13004067-13004153)
chr2 (192-247)||(29951329-29951384)
chr2 (198-265)||(29956220-29956287)
[»] chr7 (3 HSPs)
chr7 (29-109)||(25034777-25034856)
chr7 (32-85)||(9594578-9594631)
chr7 (32-85)||(9645541-9645594)
[»] chr3 (1 HSPs)
chr3 (29-116)||(14826222-14826309)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 11378142 - 11377878
Alignment:
Q  1 ttcaaatatgatgaaatatcgagactttgagcaaaataagggatttagaagcatggttagggaaagaaaggatttaagcatgattcaagactgattgagg 100  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  11378142 ttcaaatatgatgaaatatcgagtctttgagcaaaagaagggatttagaagcatggttagggaaagaaaggatttaagcatgattcaaggctgactgagg 11378043  T
Q  101 agcaaaatatgaagatttttctgcctatttatcgcgcacggttgtgcctgccactgcactgacggtgcacccctgttaccaaaccatgtgccacaacgtc 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  11378042 agcaaaatatgaagatttttctgcctatttatcgcgcacggtcgtgcctgccactgcactgaccgtgcacccctgttaccaaaccatgtgccacaacgcc 11377943  T
Q  201 gagagctgcgcacggtctgtgctcagctacacacggccatgcgcgattccagtactccctttgct 265  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  11377942 gagagctgcacacggtctgtgctcagctacacacggccgtgcgcgattctagtactccctttgct 11377878  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 17412894 - 17412972
Alignment:
Q  3 caaatatgatgaaatatcgagactttgagcaaaataagggatttagaagcatggttagggaaagaaaggatttaagcat 81  Q
    |||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| ||||||||| |||| ||||||    
T  17412894 caaatatgatgaaagatcgagtctttgagcaaaagaagggatttagaagcatggttatggaaagaaatgattcaagcat 17412972  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 22432515 - 22432623
Alignment:
Q  32 caaaataagggatttagaagcatggttagggaaagaaaggatttaagcatgattcaagactgattgaggagcaaaatatgaagatttttctgcctattta 131  Q
    ||||| |||||||||||||||||||||| ||||||||||||||  ||||||||| |||  ||||||| ||||||||||| ||||| | | ||||| ||||    
T  22432515 caaaagaagggatttagaagcatggttaaggaaagaaaggattctagcatgatttaaggttgattgaagagcaaaatataaagatctct-tgccttttta 22432613  T
Q  132 tcgcgcacgg 141  Q
    ||||||||||    
T  22432614 tcgcgcacgg 22432623  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 17522885 - 17522798
Alignment:
Q  29 gagcaaaataagggatttagaagcatggttagggaaagaaaggatttaagcatgattcaagactgattgaggagcaaaatatgaagat 116  Q
    |||||||| |||||||||||||||||||||| ||||||||| |||  |||||||||||| |  ||||| ||||| |||||||||||||    
T  17522885 gagcaaaagaagggatttagaagcatggttaaggaaagaaatgatccaagcatgattcatggttgattaaggagaaaaatatgaagat 17522798  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 13004067 - 13004153
Alignment:
Q  30 agcaaaataagggatttagaagcatggttagggaaagaaaggatttaagcatgattcaagactgattgaggagcaaaatatgaagat 116  Q
    ||||||| ||||||||||||||||||||||   |||||||||||| |||||| ||||| |  ||||||||||| |||||||||||||    
T  13004067 agcaaaagaagggatttagaagcatggttaaataaagaaaggattcaagcataattcatggttgattgaggagaaaaatatgaagat 13004153  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 29951329 - 29951384
Alignment:
Q  192 cacaacgtcgagagctgcgcacggtctgtgctcagctacacacggccatgcgcgat 247  Q
    ||||| |||||||||||||||| |||| ||||||||||| ||||||||||||||||    
T  29951329 cacaatgtcgagagctgcgcacagtctatgctcagctacgcacggccatgcgcgat 29951384  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 29956220 - 29956287
Alignment:
Q  198 gtcgagagctgcgcacggtctgtgctcagctacacacggccatgcgcgattccagtactccctttgct 265  Q
    |||||||||||||||||||| |||||||||||| || |||| |||||||| ||| |  ||||||||||    
T  29956220 gtcgagagctgcgcacggtccgtgctcagctacgcatggccgtgcgcgatgccaatgttccctttgct 29956287  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 25034856 - 25034777
Alignment:
Q  29 gagcaaaataagggatttagaagcatggttagggaaagaaaggatttaagcatgattcaagactgattgaggagcaaaata 109  Q
    |||||||| |||||||||| | ||||||||| |||||||||||||| |||||||||||| | |||||||| ||||||||||    
T  25034856 gagcaaaagaagggatttaaaggcatggttaaggaaagaaaggattcaagcatgattcatggctgattga-gagcaaaata 25034777  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 9594631 - 9594578
Alignment:
Q  32 caaaataagggatttagaagcatggttagggaaagaaaggatttaagcatgatt 85  Q
    |||||||| |||||||||| |||||||| |||||||||||||| ||||||||||    
T  9594631 caaaataatggatttagaatcatggttaaggaaagaaaggattcaagcatgatt 9594578  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 9645594 - 9645541
Alignment:
Q  32 caaaataagggatttagaagcatggttagggaaagaaaggatttaagcatgatt 85  Q
    |||||||| |||||||||| |||||||| |||||||||||||| ||||||||||    
T  9645594 caaaataatggatttagaatcatggttaaggaaagaaaggattcaagcatgatt 9645541  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 14826222 - 14826309
Alignment:
Q  29 gagcaaaataagggatttagaagcatggttagggaaagaaaggatttaagcatgattcaagactgattgaggagcaaaatatgaagat 116  Q
    |||||||| ||| |||| ||||||||||||| ||||| |||||||  || ||| || || | ||||||||||| ||||||||||||||    
T  14826222 gagcaaaagaagagattcagaagcatggttaaggaaataaaggatccaaacatcatccatggctgattgaggaacaaaatatgaagat 14826309  T

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