View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10196_low_28 (Length: 250)
Name: NF10196_low_28
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 34344033 - 34343926
Alignment:
| Q |
5 |
tgcgtttggtcagaattgattcttccnnnnnnncttttcataaactacagatgaagcaaatatatcctaatttctcatgtttgccctctccgaagccaac |
104 |
Q |
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| T |
34344033 |
tgcgtttggtcagaatcaattcttccaaaaaaacttttcataaactacagataaagcaaatatatcctaatttctcatgtttgccccctccgaagccaac |
34343934 |
T |
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| Q |
105 |
ttttactc |
112 |
Q |
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|||||||| |
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| T |
34343933 |
ttttactc |
34343926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 34343860 - 34343797
Alignment:
| Q |
178 |
cataatgtatcggatacatttttgatatcactgcttgtgtttcagcttctcgttattcctttgc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |
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| T |
34343860 |
cataatgtatcggatacatttttgatatcactgcttgtgcttgagcttttcgttattcctttgc |
34343797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 43738686 - 43738579
Alignment:
| Q |
5 |
tgcgtttggtcagaattgattcttccnnnnnnncttttcataaactacagatgaagcaaatatatcctaatttctcatgtttgccctctccgaagccaac |
104 |
Q |
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| T |
43738686 |
tgcgtttggtcagaatcgattcttccaaaaaaacttttcataaacgacagataaaacaaatatatcctaatttctcatgtttgccccctccgaagccaac |
43738587 |
T |
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| Q |
105 |
ttttactc |
112 |
Q |
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|||||||| |
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| T |
43738586 |
ttttactc |
43738579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 36204462 - 36204575
Alignment:
| Q |
1 |
cttctgcgtttggtcagaattgattcttccnnnnnnn--cttttcataaactacagatgaagcaaatatatcctaatttctcatgtttgccctctccgaa |
98 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||| ||| || ||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
36204462 |
cttctgcatttggtcagaattgattcttccaaaaaaaaacttttcataaatgacaaataaagcaaatatatcataatttctcatgtttgccccctccgaa |
36204561 |
T |
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| Q |
99 |
gccaacttttactc |
112 |
Q |
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|||||||||||||| |
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| T |
36204562 |
gccaacttttactc |
36204575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 36204642 - 36204705
Alignment:
| Q |
178 |
cataatgtatcggatacatttttgatatcactgcttgtgtttcagcttctcgttattcctttgc |
241 |
Q |
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|||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| |||| |
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| T |
36204642 |
cataatgtatcggatatatttttgatatcactgcttgtgcttgagcttctcgttattcccttgc |
36204705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 31429328 - 31429217
Alignment:
| Q |
1 |
cttctgcgtttggtcagaattgattcttccnnnnnnncttttcataaactacagatgaagcaaatatatcctaatttctcatgtttgccctctccgaagc |
100 |
Q |
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|||||| ||||||||||||| |||||||| |||||||||||| | |||| ||||| |||||||||||| ||||||| |||||| |||||||| |
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| T |
31429328 |
cttctgtgtttggtcagaatcgattcttcacaaaaaacttttcataaacaaaagataaagcagatatatcctaatctctcatgcttgccccatccgaagc |
31429229 |
T |
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| Q |
101 |
caacttttactc |
112 |
Q |
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||||| |||||| |
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| T |
31429228 |
caactgttactc |
31429217 |
T |
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