View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10196_low_30 (Length: 250)
Name: NF10196_low_30
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 31753353 - 31753591
Alignment:
| Q |
11 |
cagagagaacaactaagtccttaaggtttagtccatgcgacttgaaatttgtgatgagttgtgagaaattgaaaaatggaggaggaagatttgtatttgc |
110 |
Q |
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| T |
31753353 |
cagatagaacaactaagtctttaaggtttagtccttgagactgaaaatttgcgatgagttgtgagaagttaaaaaatgccggtggaagatttatatttgc |
31753452 |
T |
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| Q |
111 |
tgcatccctgcttgcaaatcttgaatctcttctacctagtaacacttggtaccaatatttgtgaccgcccaactgataattgatgcaaaatttgttagtt |
210 |
Q |
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| T |
31753453 |
tgcatctctgcttgcaaatcttgaatctcttctgcccagtaacacttggtaccaatatttgtgaccgcccaactgttaattgatgcaaaatttgttagtt |
31753552 |
T |
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| Q |
211 |
gtcagtgttatagaacaaccaagtctttaaaattagaaa |
249 |
Q |
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| T |
31753553 |
gtcagtgttatagaacaactaagtctttaaaattagaaa |
31753591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 31767718 - 31767921
Alignment:
| Q |
11 |
cagagagaacaactaagtccttaaggtttagtccatgcgacttgaaatttgtgatgagttgtgagaaattgaaaaatggaggaggaagatttgtatttgc |
110 |
Q |
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|||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |
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| T |
31767718 |
cagatagaacaactaaatctttaaggtttagtccatgtgacttgaaatttgtgatgagttgtgagaagttaaagaatggaggaggaagatttgtatttgc |
31767817 |
T |
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| Q |
111 |
tgcatccctgcttgcaaatcttgaatctcttctacctagtaacacttggtaccaatatttgtgaccgcccaactgataattgatgcaaaatttgttagtt |
210 |
Q |
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| T |
31767818 |
tgcatccctgcttgcaaatcttgaatctcttcttcctagtaacacttggtaccaatattgcttaccacccaactgttaattgaagcaaaatttgttagtt |
31767917 |
T |
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| Q |
211 |
gtca |
214 |
Q |
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|||| |
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| T |
31767918 |
gtca |
31767921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 31760965 - 31761123
Alignment:
| Q |
11 |
cagagagaacaactaagtccttaaggtttagtccatgcgacttgaaatttgtgatgagttgtgagaaattgaaaaatggaggaggaagatttgtatttgc |
110 |
Q |
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|||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31760965 |
cagatagaacaactaagtctttaaggttaagtccatgagacttgaaatttgtgatgagttgtgagaaattgaaaaatggaggaggaagatttgtatttgc |
31761064 |
T |
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| Q |
111 |
tgcatccctgcttgcaaatcttgaatctcttctacctagtaacacttggtaccaatatt |
169 |
Q |
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| T |
31761065 |
tgcatccctgcttgcaaatcttgaatctcttcttcctagtaacacttggtaccaatatt |
31761123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 31749751 - 31749593
Alignment:
| Q |
11 |
cagagagaacaactaagtccttaaggtttagtccatgcgacttgaaatttgtgatgagttgtgagaaattgaaaaatggaggaggaagatttgtatttgc |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || || |||||||||||||||||||||||||| |
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| T |
31749751 |
cagatagaacaactaagtccttaaggtttagtccatgtgacttgaaatttttgatgagttgtgagaagttaaagaatggaggaggaagatttgtatttgc |
31749652 |
T |
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| Q |
111 |
tgcatccctgcttgcaaatcttgaatctcttctacctagtaacacttggtaccaatatt |
169 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31749651 |
tgcatctctgcttgcaaatcttgaatctcttcttcctagtaacacttggtaccaatatt |
31749593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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