View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10196_low_33 (Length: 248)

Name: NF10196_low_33
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10196_low_33
NF10196_low_33
[»] chr2 (3 HSPs)
chr2 (11-231)||(37401947-37402166)
chr2 (59-93)||(18570996-18571030)
chr2 (61-93)||(34993983-34994015)
[»] chr5 (1 HSPs)
chr5 (130-231)||(42945256-42945366)
[»] scaffold0623 (1 HSPs)
scaffold0623 (180-229)||(5864-5913)
[»] chr6 (2 HSPs)
chr6 (59-93)||(9024177-9024211)
chr6 (59-91)||(7942279-7942311)
[»] chr4 (3 HSPs)
chr4 (59-92)||(18513243-18513276)
chr4 (59-142)||(34589661-34589741)
chr4 (61-93)||(35723385-35723417)
[»] chr1 (1 HSPs)
chr1 (59-92)||(30847722-30847755)
[»] chr7 (3 HSPs)
chr7 (65-122)||(41811668-41811730)
chr7 (61-93)||(4909177-4909209)
chr7 (59-87)||(38134413-38134441)
[»] chr3 (2 HSPs)
chr3 (59-92)||(23144101-23144134)
chr3 (63-95)||(40150570-40150602)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 37402166 - 37401947
Alignment:
Q  11 gcagcacagacacgaacaaatcgacaccgattataattttnnnnnnnntgacataattcaatgtaatcatatgtgtcagtgtctgcgtcagacatgatag 110  Q
    |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37402166 gcagcacagacacgaacaaatcgacaccgattataattt-aaaaaaaatgacataattcaatgtaatcatatgtgtcagtgtctgcgtcagacatgatag 37402068  T
Q  111 gtatccgacatcaagacacgcctaatccgaggtgtatctatagttcataaaagattaaaataaaaaacacatagttaacctgtttattaaaagcttccat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37402067 gtatccgacatcaagacacgcctaatccgaggtgtatctatagttcataaaagattaaaataaaaaacacatagttaacctgtttattaaaagcttccat 37401968  T
Q  211 tcccatatcagaactgcttct 231  Q
    |||||||||||||||||||||    
T  37401967 tcccatatcagaactgcttct 37401947  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 93
Target Start/End: Original strand, 18570996 - 18571030
Alignment:
Q  59 tgacataattcaatgtaatcatatgtgtcagtgtc 93  Q
    |||||||||||||||||||||||||||||||||||    
T  18570996 tgacataattcaatgtaatcatatgtgtcagtgtc 18571030  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 34994015 - 34993983
Alignment:
Q  61 acataattcaatgtaatcatatgtgtcagtgtc 93  Q
    ||||||||||||||||| |||||||||||||||    
T  34994015 acataattcaatgtaattatatgtgtcagtgtc 34993983  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 42945256 - 42945366
Alignment:
Q  130 gcctaatccgaggtgtatctatagttcataaaagattaaaataaa---------aaacacatagttaacctgtttattaaaagcttccattcccatatca 220  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||         |||||||||||| |||| ||||||||||||||| ||||||||||||    
T  42945256 gcctaatccgaggtgtatctataattcataaaagattaaaattaactaagcagaaaacacatagttgacctttttattaaaagcttcaattcccatatca 42945355  T
Q  221 gaactgcttct 231  Q
    |||||||||||    
T  42945356 gaactgcttct 42945366  T

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Target: scaffold0623 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 5864 - 5913
Alignment:
Q  180 catagttaacctgtttattaaaagcttccattcccatatcagaactgctt 229  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  5864 catagttcacctgtttattaaaagtttccattcccatatcagaactgctt 5913  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 93
Target Start/End: Complemental strand, 9024211 - 9024177
Alignment:
Q  59 tgacataattcaatgtaatcatatgtgtcagtgtc 93  Q
    |||||||||||||||||||||||||||||||||||    
T  9024211 tgacataattcaatgtaatcatatgtgtcagtgtc 9024177  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 7942279 - 7942311
Alignment:
Q  59 tgacataattcaatgtaatcatatgtgtcagtg 91  Q
    ||||||||||||||||||||| |||||||||||    
T  7942279 tgacataattcaatgtaatcacatgtgtcagtg 7942311  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 18513276 - 18513243
Alignment:
Q  59 tgacataattcaatgtaatcatatgtgtcagtgt 92  Q
    ||||||||||||||||||||||||||||||||||    
T  18513276 tgacataattcaatgtaatcatatgtgtcagtgt 18513243  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 34589741 - 34589661
Alignment:
Q  59 tgacataattcaatgtaatcatatgtgtcagtgtctgcgtcagacatgataggtatccgacatcaagacacgcctaatccgagg 142  Q
    ||||||||||||||||||||  ||||||| ||||| | ||| |||| |||| ||||| |||| | || ||||||||||||||||    
T  34589741 tgacataattcaatgtaatc--atgtgtc-gtgtcagtgtcggacacgatacgtatctgacaccgaggcacgcctaatccgagg 34589661  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 35723417 - 35723385
Alignment:
Q  61 acataattcaatgtaatcatatgtgtcagtgtc 93  Q
    ||||||||||||||||| |||||||||||||||    
T  35723417 acataattcaatgtaattatatgtgtcagtgtc 35723385  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 30847755 - 30847722
Alignment:
Q  59 tgacataattcaatgtaatcatatgtgtcagtgt 92  Q
    ||||||||||||||||||||||||||||||||||    
T  30847755 tgacataattcaatgtaatcatatgtgtcagtgt 30847722  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 41811668 - 41811730
Alignment:
Q  65 aattcaatgtaatcatatgtgtcagtgtc-----tgcgtcagacatgataggtatccgacatc 122  Q
    |||||||||||||||||||||||||||||      | ||||||||||||| ||||||||||||    
T  41811668 aattcaatgtaatcatatgtgtcagtgtcgtgttggtgtcagacatgatatgtatccgacatc 41811730  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 4909177 - 4909209
Alignment:
Q  61 acataattcaatgtaatcatatgtgtcagtgtc 93  Q
    |||||||||| ||||||||||||||||||||||    
T  4909177 acataattcattgtaatcatatgtgtcagtgtc 4909209  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 87
Target Start/End: Complemental strand, 38134441 - 38134413
Alignment:
Q  59 tgacataattcaatgtaatcatatgtgtc 87  Q
    |||||||||||||||||||||||||||||    
T  38134441 tgacataattcaatgtaatcatatgtgtc 38134413  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 23144134 - 23144101
Alignment:
Q  59 tgacataattcaatgtaatcatatgtgtcagtgt 92  Q
    |||||||||||||||||||||||||||| |||||    
T  23144134 tgacataattcaatgtaatcatatgtgttagtgt 23144101  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 40150602 - 40150570
Alignment:
Q  63 ataattcaatgtaatcatatgtgtcagtgtctg 95  Q
    ||||||||||||||||||||||||| |||||||    
T  40150602 ataattcaatgtaatcatatgtgtcggtgtctg 40150570  T

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