View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10196_low_34 (Length: 242)
Name: NF10196_low_34
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 13412676 - 13412442
Alignment:
| Q |
4 |
tgaatatattgatctagtaaagtttcatagataaaatgatctaataaagttccataaaaagccctcaatttatttatcatggaaatagtctagcattata |
103 |
Q |
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| T |
13412676 |
tgaatatattgatctagtaaa-tttcatagataaaatgatctaataaagttccataaaaagccctcaatttatttatcatggaaatagtctagcattata |
13412578 |
T |
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| Q |
104 |
accaaaatgcattaaatttattctcatgaaaagaaacacttaaccaagtgtctcaaatttgaatccaagatagatcaacagcgttagcaattttagggat |
203 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
13412577 |
accgaaatgcattaaatttattctcatgaaaagaaacacttaaccaagtgtctcaaatttgaatccaagatagatcaacaacgttaacaattttagggat |
13412478 |
T |
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| Q |
204 |
tctttgccgtcaatttggatcaaaatatcagtctct |
239 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
13412477 |
tctttgccgtcaatttggatcaaaatatcagtctct |
13412442 |
T |
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