View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10196_low_36 (Length: 238)

Name: NF10196_low_36
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10196_low_36
NF10196_low_36
[»] chr8 (3 HSPs)
chr8 (1-223)||(1350076-1350298)
chr8 (1-120)||(1343630-1343749)
chr8 (1-120)||(1355838-1355957)
[»] chr3 (1 HSPs)
chr3 (19-128)||(24618067-24618176)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1350076 - 1350298
Alignment:
Q  1 ttcaattaaagccattaaatgatctcacatgtcatgcattagcacgattaattgaaggaaaatcacccaaggagatacgcgacatgtttatttggcctca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1350076 ttcaattaaagccattaaatgatctcacatgtcatgcattagcacgattaattgaaggaaaatcacccaaggagatacgcgacatgtttatttggcctca 1350175  T
Q  101 tgatcttacagaggaagagatattggagtcaattataaataaaacttgtgactgcaaaatcaggcatttgaaccgcttaaacataaataggcgtaaagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1350176 tgatcttacagaggaagagatattggagtcaattataaataaaacttgtgactgcaaaatcaggcatttgaaccgcttaaacataaataggcgtaaagag 1350275  T
Q  201 cgtgaaagggtactggagaatgt 223  Q
    |||||||||||||||||||||||    
T  1350276 cgtgaaagggtactggagaatgt 1350298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 1343630 - 1343749
Alignment:
Q  1 ttcaattaaagccattaaatgatctcacatgtcatgcattagcacgattaattgaaggaaaatcacccaaggagatacgcgacatgtttatttggcctca 100  Q
    |||| ||||| |||||  |||||||||||||||||||| || |  || ||||||||||||||||| |  |||||||||||||||| |||  || |||| |    
T  1343630 ttcagttaaatccattgtatgatctcacatgtcatgcaataactagaataattgaaggaaaatcatctgaggagatacgcgacatatttcatttgcctga 1343729  T
Q  101 tgatcttacagaggaagaga 120  Q
    ||||||||  ||||||||||    
T  1343730 tgatcttatggaggaagaga 1343749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 1355957 - 1355838
Alignment:
Q  1 ttcaattaaagccattaaatgatctcacatgtcatgcattagcacgattaattgaaggaaaatcacccaaggagatacgcgacatgtttatttggcctca 100  Q
    |||| ||||| |||||  |||||||||||||||||||| || |  || ||||||||||||||||| |  |||||||||||||||| |||  || |||| |    
T  1355957 ttcagttaaatccattgtatgatctcacatgtcatgcaataactagaataattgaaggaaaatcatctgaggagatacgcgacatatttcatttgcctga 1355858  T
Q  101 tgatcttacagaggaagaga 120  Q
    ||||||||  ||||||||||    
T  1355857 tgatcttatggaggaagaga 1355838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 24618067 - 24618176
Alignment:
Q  19 atgatctcacatgtcatgcattagcacgattaattgaaggaaaatcacccaaggagatacgcgacatgtttatttggcctcatgatcttacagaggaaga 118  Q
    |||||||||||||||||||| |||| ||| |||| |||||||  ||| |  ||||||||| |||||| |||  || |||| |||||||||  ||||||||    
T  24618067 atgatctcacatgtcatgcaatagctcgaataatcgaaggaaggtcatcggaggagatacacgacatatttcatttgcctgatgatcttatggaggaaga 24618166  T
Q  119 gatattggag 128  Q
    || |||||||    
T  24618167 gaaattggag 24618176  T

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