View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10196_low_4 (Length: 468)
Name: NF10196_low_4
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 104 - 458
Target Start/End: Complemental strand, 52592800 - 52592446
Alignment:
| Q |
104 |
taatagcccaatatagtctataaactaatgccatctttatgtttttggtcttgtttaataacttaggtaatcttccccacctccaaaaaccgtattttgt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
52592800 |
taatagcccaatatagtctataaactaatgccatctttatgtttttggtcttgtttaataacttaggtaatcttccccacctccgaaaaccgtattttgt |
52592701 |
T |
|
| Q |
204 |
attccataataatcataatgtgcttttgattgaaattcattgttatcagaatagaagatgaaatattgcataatcatcgccaagacaattgtttcccatt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52592700 |
attccataataatcataatgtgcttttgattgaaattcattgttatcagaatagaagatgaaatattgcataatcatcgccaagacaattgtttcccatt |
52592601 |
T |
|
| Q |
304 |
gaaaaagatatcaagctgatttcattgttgtgaagagaccagaagtgaggttcttgttcccaacaagtgctgatcttgtcttgtaacttagaatgtatcc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52592600 |
gaaaaagatatcaagctgatttcattgttgtgaagagaccagaagtgaggttcttgttcccaacaagtgctgatcttgtcttgtaacttagaatgtatcc |
52592501 |
T |
|
| Q |
404 |
caaccaagcattctcttcagggtcctatatggatatgttcacctcgagtcctttg |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52592500 |
caaccaagcattctcttcagggtcctatatggatatgttcacctcgagtcctttg |
52592446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University