View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10196_low_41 (Length: 226)
Name: NF10196_low_41
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_low_41 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 49433576 - 49433351
Alignment:
| Q |
1 |
aataattgtgttcaattttgaaatggtaatttctcggatgatcagtcaagcaattaattgaatatattttgggataaactgtgtcaagagctctgcatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49433576 |
aataattgtgttcaattttgaaatggtaatttctcggatgatcagtcaagcaattgattgaatatattttgggataaactgtgtcaagagctctgcatat |
49433477 |
T |
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| Q |
101 |
actattcatgaatgtcctgccttgccattccttgacagtcatactaatgtttctttcatcttgactgattatatttttcatcttattgnnnnnnnnnnat |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49433476 |
actattcatgaatgtcttgccttgccattccttgacagtcatactaatgtttctttcatcttgactgattatatttttcatcttattgttttttttttat |
49433377 |
T |
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| Q |
201 |
ttgactcatattcaaaatgctctgcc |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
49433376 |
ttgactcatattcaaaatgctctgcc |
49433351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 22377837 - 22377612
Alignment:
| Q |
1 |
aataattgtgttcaattttgaaatggtaatttctcggatgatcagtcaagcaattaattgaatatattttgggataaactgtgtcaagagctctgcatat |
100 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22377837 |
aataactgtgttcaattttgaaatggtaatttcttggatgatcagtcaagcaattaattgaatatattttgggataaactgtgtcaagagctctgcatat |
22377738 |
T |
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| Q |
101 |
actattcatgaatgtcctgccttgccattccttgacagtcatactaatgtttctttcatcttgactgattatatttttcatcttattgnnnnnnnnnnat |
200 |
Q |
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|||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
22377737 |
actattcatgaatgtcctaccttgccatgccttcacagtcatactaatgtttctttcatcttgactgattatatttttcatcttattgttttttttttat |
22377638 |
T |
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| Q |
201 |
ttgactcatattcaaaatgctctgcc |
226 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
22377637 |
ttgattcatattcaaaatgctctgcc |
22377612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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