View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10196_low_42 (Length: 219)
Name: NF10196_low_42
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 42219575 - 42219759
Alignment:
| Q |
20 |
ccttcgccttcctctcaagcaacgacttcctatccttatccaatctcagcttagtaacgacaactttggaaggatcaacaccaacattaacagtagaacc |
119 |
Q |
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| T |
42219575 |
ccttcgccttcctctcaagcaacgacttcctatccttatccaatctcagcttagtaacaacaactttggaaggatcaacaccaacattaacagtagaacc |
42219674 |
T |
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| Q |
120 |
attaactttctcacgagtaatacgttcaatatgaataacccattttttgcgataaacttgaacgattttaccttcacggcctttg |
204 |
Q |
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| T |
42219675 |
attaactttctcacgagtaatacgttcaatatgaataacccattttttgcgataaacttgaacgattttaccttcacggcctttg |
42219759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 179
Target Start/End: Complemental strand, 5404529 - 5404396
Alignment:
| Q |
46 |
ttcctatccttatccaatctcagcttagtaacgacaactttggaaggatcaacaccaacattaacagtagaaccattaactttctcacgagtaatacgtt |
145 |
Q |
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| T |
5404529 |
ttcctatccttgtccaaacgaatcttagtaatcacaacctttgaaggatcaacaccaacattcacagtttgaccattcaccttctcacgtgtaatcctct |
5404430 |
T |
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| Q |
146 |
caatatgaataacccattttttgcgataaacttg |
179 |
Q |
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| T |
5404429 |
caatatgaatcacccatttcctgcgataaacttg |
5404396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 3085319 - 3085438
Alignment:
| Q |
42 |
cgacttcctatccttatccaatctcagcttagtaacgacaactttggaaggatcaacaccaacattaacagtagaaccattaactttctcacgagtaata |
141 |
Q |
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| T |
3085319 |
cgacttacgatccttatccaatctgagcttagtgataacaacctttgaaggattaacaccaacattaacggtggatccattcaccttctcccttgtgatg |
3085418 |
T |
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| Q |
142 |
cgttcaatatgaataaccca |
161 |
Q |
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| T |
3085419 |
cgttcaatgtgaatcaccca |
3085438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 2468699 - 2468604
Alignment:
| Q |
69 |
cttagtaacgacaactttggaaggatcaacaccaacattaacagtagaaccattaactttctcacgagtaatacgttcaatatgaataacccattt |
164 |
Q |
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| T |
2468699 |
cttagtaatcacaaccttcgaaggattaacaccaatattcacagtttgaccattaaccttctcacgagttatcctttcgatatgaatcacccattt |
2468604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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