View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10196_low_46 (Length: 203)

Name: NF10196_low_46
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10196_low_46
NF10196_low_46
[»] chr4 (2 HSPs)
chr4 (24-187)||(7894399-7894562)
chr4 (14-126)||(35718107-35718224)
[»] chr3 (1 HSPs)
chr3 (23-144)||(37147680-37147801)
[»] chr2 (1 HSPs)
chr2 (14-104)||(35411078-35411169)


Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 7894562 - 7894399
Alignment:
Q  24 aattgaagaagataaattacaatgaatgtttgttggacaaaattgaaaacgaaattgtgaatttattaattagatccaagttgaactcttaattaaggga 123  Q
    ||||||||| ||||||||||||| |||||||||||||  |||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||    
T  7894562 aattgaagaggataaattacaataaatgtttgttggatgaaattgaaaacgaaattgtgaattaattaattaaatcaaagttgaactcttaattaaggga 7894463  T
Q  124 aatcaatagcgattatcaatcgaatacaaaaaaccatagcaagaagaacagtattctatgatgt 187  Q
    |||||||||||||||||| |||||||| ||||| |||||  |||| |||| |||||||||||||    
T  7894462 aatcaatagcgattatcagtcgaatacgaaaaatcatagtgagaaaaacaatattctatgatgt 7894399  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 35718224 - 35718107
Alignment:
Q  14 aaagggtat-aaattgaagaagataaattacaatgaatgtttgttggacaaaattgaaaacgaaattg----tgaatttattaattagatccaagttgaa 108  Q
    ||||||||| |||||||||| || ||||||||| |||||||||||||||||| |||||||||| ||||    | |||| |||||||| || |||||||||    
T  35718224 aaagggtatgaaattgaagaggacaaattacaaagaatgtttgttggacaaagttgaaaacgacattgtaaattaattaattaattaaattcaagttgaa 35718125  T
Q  109 ctcttaattaagggaaat 126  Q
     |||||| ||||||||||    
T  35718124 atcttaagtaagggaaat 35718107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 37147680 - 37147801
Alignment:
Q  23 aaattgaagaagataaattacaatgaatgtttgttggacaaaattgaaaacgaaattgtgaatttattaattagatccaagttgaactcttaattaaggg 122  Q
    |||||||||| |||||||||||| | ||||||||||||| || |||||||| |||||||||||| |||||||| ||| | |||||||||||||||||| |    
T  37147680 aaattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaatcaatgttgaactcttaattaagag 37147779  T
Q  123 aaatcaatagcgattatcaatc 144  Q
    |||| |||||||||||||||||    
T  37147780 aaattaatagcgattatcaatc 37147801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 35411078 - 35411169
Alignment:
Q  14 aaagggtataaa-ttgaagaagataaattacaatgaatgtttgttggacaaaattgaaaacgaaattgtgaatttattaattagatccaagt 104  Q
    |||||||||||| || |||| |||||||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||| || |||||    
T  35411078 aaagggtataaaattaaagaggataaatttcaatgaatgtttgttggacgaaattcaaaacgaaattgtgaattaattaattaaattcaagt 35411169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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