View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10196_low_5 (Length: 445)
Name: NF10196_low_5
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 6 - 428
Target Start/End: Original strand, 49772138 - 49772560
Alignment:
| Q |
6 |
agaagcataggctgagagaaatgctgccactgctggaagcaaacagattattgaactgtcgcctaaattggaatgttcgtcaggtgagttacaattagct |
105 |
Q |
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| T |
49772138 |
agaagcattggctgagagaaatgctgccactgctggaagcaaacagattattgaactgtcgcctaaattggaatgttcgtcaggtgagttacaattagct |
49772237 |
T |
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| Q |
106 |
tactaaacttcttcctattttacttcacatgttaattcactgtaagatgattgatataattttgatgtaacaaaaggaaatgcaagtcgaagaagttttt |
205 |
Q |
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| T |
49772238 |
tactaaacttcttcctattttacttcacatgttaattcactgtaagatgattgatataattttgatgtaacaaaaggaaatgcaagtcgaagaagttttt |
49772337 |
T |
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| Q |
206 |
cttcaacgacgctatcaacaaaggtaggcagcattaatgcagctgatcacactaggaagcgggggatggttcttcctttcactcccctttctatcacttt |
305 |
Q |
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| T |
49772338 |
cttcaacgacgctatcaacaaaggtaggcagcattaatgcagctgatcacactaggaagcgggggatggttcttcctttcactcccctttctatcacttt |
49772437 |
T |
|
| Q |
306 |
tgatgaaatcggatatgccgtggacatgccgcaggtacaagaattagcttcaaacttcaaaggaacttttaagtggataattccactatcaaatcatcaa |
405 |
Q |
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| T |
49772438 |
tgatgaaatcggatatgccgtggacatgccgcaggtacaagaattagcttcaaacttcaaaggaacttttaagtggataattccactatcaaatcatcaa |
49772537 |
T |
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| Q |
406 |
cttgaaatgtagtggtcatttct |
428 |
Q |
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| T |
49772538 |
cttgaaatgtagtggtcatttct |
49772560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 3826354 - 3826272
Alignment:
| Q |
58 |
gaactgtcgcctaaattggaatgttcgtcaggtgagttacaa-ttagcttactaaacttcttcctattttacttcacatgtta |
139 |
Q |
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| T |
3826354 |
gaactgtctcttacattagaatgttcttcaggtgagttataagttagcgtacaaaacttcttcctattttgcttcacatgtta |
3826272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 3825732 - 3825686
Alignment:
| Q |
6 |
agaagcataggctgagagaaatgctgccactgctggaagcaaacaga |
52 |
Q |
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| T |
3825732 |
agaagcattggctgagggaaatgctgccactgctggaaacaaacaga |
3825686 |
T |
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