View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10196_low_6 (Length: 441)
Name: NF10196_low_6
Description: NF10196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10196_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 41150987 - 41150574
Alignment:
| Q |
18 |
aaaagccacatctttggtactaattagagatgcagcctttataagatttccttcaacattgttgttttcatcatctacaacgattacaaacttcnnnnnn |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41150987 |
aaaagccacatctttggtactaattagagatgcagcctttataagatttccttcaacattgttgttttcatcatctacaacgattacaaacttcaaaaaa |
41150888 |
T |
|
| Q |
118 |
ntattgatctaggagttagatatgatcaatccattatttaatagcatgctaatttatttatctgtatgttcagcttgacggtgattttgtcacaatacgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41150887 |
atattgatctaggagttagatatgatcaatccattatttaatagcatgctaatttatttatttgtatgttcagattgacggtgattttgtcacaatacgt |
41150788 |
T |
|
| Q |
218 |
gttagtgtcaatgtgattt-gatcaaagttgcatttttgtattttatcgaagtcatcgtgctactatgattttgttagaatcaccgtgattccaaacatg |
316 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
41150787 |
gttagtgtcaatgtgattttgatcaaagttgcatttttgtattttaacgaagtcatcgtgctactatgattttattagaatcatcgtgattccaaacatg |
41150688 |
T |
|
| Q |
317 |
tattagacataacgaacaaaggtaaaattctaactaacctttccttggtgtaacgcatttagggcatgctcaatggaagagtaccctttagagggacaat |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41150687 |
tattagacataacgaacaaaggtaaaattctaactaacctttccttggtgtaacgcatttagggcatgctcaatggaagagtatcctttagagggacaat |
41150588 |
T |
|
| Q |
417 |
ctggatcaccttca |
430 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
41150587 |
ctggatcaccttca |
41150574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 46090067 - 46090025
Alignment:
| Q |
274 |
gtgctactatgattttgttagaatcaccgtgattccaaacatg |
316 |
Q |
| |
|
|||||||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
46090067 |
gtgctactatgattttgttaaatttaccgtgattccaaacatg |
46090025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University