View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10197_high_1 (Length: 631)

Name: NF10197_high_1
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10197_high_1
NF10197_high_1
[»] chr8 (26 HSPs)
chr8 (4-264)||(27056562-27056816)
chr8 (256-450)||(27056336-27056532)
chr8 (483-612)||(27056175-27056304)
chr8 (112-264)||(9642358-9642504)
chr8 (168-264)||(29108829-29108920)
chr8 (249-323)||(15068498-15068572)
chr8 (168-264)||(39445583-39445674)
chr8 (172-264)||(17469249-17469336)
chr8 (168-264)||(27932403-27932494)
chr8 (168-264)||(32303051-32303142)
chr8 (112-150)||(9434978-9435016)
chr8 (253-319)||(9642277-9642343)
chr8 (168-262)||(45236055-45236144)
chr8 (168-264)||(8545356-8545447)
chr8 (169-264)||(20399583-20399673)
chr8 (220-265)||(15068594-15068639)
chr8 (213-264)||(10297488-10297539)
chr8 (168-264)||(24927939-24928030)
chr8 (105-144)||(36274971-36275010)
chr8 (253-323)||(24928057-24928127)
chr8 (168-206)||(30481481-30481519)
chr8 (253-323)||(32303169-32303239)
chr8 (169-206)||(1012610-1012647)
chr8 (253-318)||(9435153-9435218)
chr8 (220-264)||(1063544-1063588)
chr8 (220-264)||(5858659-5858703)
[»] chr7 (38 HSPs)
chr7 (4-264)||(5565314-5565569)
chr7 (112-264)||(10995841-10995982)
chr7 (253-324)||(5565216-5565287)
chr7 (50-141)||(27896603-27896694)
chr7 (168-264)||(45380102-45380193)
chr7 (168-264)||(10072461-10072552)
chr7 (168-262)||(33841073-33841162)
chr7 (169-263)||(12980373-12980462)
chr7 (168-264)||(16866164-16866255)
chr7 (170-264)||(18825879-18825968)
chr7 (168-264)||(3226953-3227044)
chr7 (213-265)||(18684009-18684061)
chr7 (220-264)||(27850333-27850377)
chr7 (168-264)||(17885460-17885551)
chr7 (168-264)||(21702654-21702745)
chr7 (213-264)||(31426043-31426094)
chr7 (168-264)||(35074465-35074556)
chr7 (168-264)||(39456022-39456112)
chr7 (213-264)||(42908048-42908099)
chr7 (168-264)||(43507440-43507531)
chr7 (112-150)||(8906704-8906742)
chr7 (214-263)||(3157119-3157168)
chr7 (184-261)||(32546203-32546275)
chr7 (187-262)||(29014961-29015037)
chr7 (220-264)||(41103698-41103742)
chr7 (184-264)||(5377096-5377171)
chr7 (184-264)||(22973399-22973474)
chr7 (257-319)||(8906503-8906565)
chr7 (253-323)||(17885578-17885648)
chr7 (174-264)||(27896482-27896567)
chr7 (253-323)||(35074583-35074653)
chr7 (253-322)||(10072579-10072648)
chr7 (224-261)||(10990871-10990908)
chr7 (213-262)||(30839143-30839192)
chr7 (220-264)||(16079055-16079099)
chr7 (220-264)||(28309534-28309578)
chr7 (220-264)||(41741457-41741501)
chr7 (255-323)||(44734269-44734337)
[»] chr4 (33 HSPs)
chr4 (11-263)||(10301923-10302170)
chr4 (253-322)||(10302198-10302267)
chr4 (184-264)||(29527824-29527899)
chr4 (74-130)||(45275362-45275418)
chr4 (168-264)||(5902622-5902713)
chr4 (168-264)||(6382280-6382371)
chr4 (168-264)||(7608966-7609057)
chr4 (213-264)||(43309519-43309570)
chr4 (168-264)||(44317531-44317622)
chr4 (169-264)||(1724318-1724408)
chr4 (112-150)||(3737720-3737758)
chr4 (168-262)||(47550363-47550452)
chr4 (220-264)||(32596192-32596236)
chr4 (168-264)||(11028069-11028160)
chr4 (221-264)||(12825469-12825512)
chr4 (168-264)||(31752452-31752543)
chr4 (168-264)||(48459477-48459568)
chr4 (169-264)||(6482043-6482133)
chr4 (169-260)||(26564828-26564914)
chr4 (249-323)||(45065359-45065433)
chr4 (213-325)||(31782649-31782768)
chr4 (220-261)||(39375321-39375362)
chr4 (253-325)||(37349226-37349298)
chr4 (249-324)||(1866459-1866534)
chr4 (185-264)||(3737789-3737863)
chr4 (170-262)||(15987272-15987359)
chr4 (168-264)||(31918566-31918657)
chr4 (213-264)||(41915004-41915055)
chr4 (249-295)||(10574370-10574416)
chr4 (112-150)||(43309426-43309464)
chr4 (253-323)||(43893341-43893411)
chr4 (213-261)||(10574430-10574478)
chr4 (224-264)||(11173020-11173060)
[»] chr2 (20 HSPs)
chr2 (43-150)||(10212273-10212380)
chr2 (256-319)||(22900906-22900969)
chr2 (112-264)||(22900729-22900876)
chr2 (168-264)||(15546735-15546826)
chr2 (168-264)||(7314655-7314746)
chr2 (168-263)||(24414140-24414230)
chr2 (258-323)||(10212520-10212585)
chr2 (220-264)||(37106730-37106774)
chr2 (172-264)||(30846941-30847028)
chr2 (253-324)||(30847055-30847126)
chr2 (168-264)||(37999474-37999565)
chr2 (253-319)||(15546853-15546919)
chr2 (184-262)||(38342528-38342601)
chr2 (112-145)||(15546676-15546709)
chr2 (220-261)||(37472769-37472810)
chr2 (262-323)||(39256370-39256431)
chr2 (213-262)||(43371584-43371633)
chr2 (184-264)||(14331534-14331609)
chr2 (253-323)||(6027811-6027881)
chr2 (249-323)||(26755845-26755919)
[»] chr1 (33 HSPs)
chr1 (28-150)||(38686514-38686641)
chr1 (112-262)||(10778576-10778721)
chr1 (168-264)||(29936407-29936498)
chr1 (114-264)||(34085170-34085317)
chr1 (168-264)||(18354087-18354178)
chr1 (220-264)||(5181077-5181121)
chr1 (168-264)||(17134938-17135029)
chr1 (249-324)||(19003575-19003650)
chr1 (168-264)||(19572519-19572610)
chr1 (168-264)||(36187227-36187318)
chr1 (168-262)||(28297925-28298014)
chr1 (213-265)||(19003672-19003724)
chr1 (220-263)||(3627993-3628036)
chr1 (213-264)||(16237311-16237362)
chr1 (168-264)||(23490778-23490869)
chr1 (168-264)||(51421849-51421940)
chr1 (253-323)||(20774675-20774745)
chr1 (257-323)||(38686763-38686829)
chr1 (223-273)||(44632139-44632189)
chr1 (220-264)||(24710885-24710929)
chr1 (249-296)||(10450014-10450061)
chr1 (168-206)||(13390404-13390442)
chr1 (168-206)||(23966864-23966902)
chr1 (253-323)||(29936531-29936601)
chr1 (214-264)||(33293538-33293588)
chr1 (220-262)||(42707846-42707888)
chr1 (223-264)||(16408983-16409024)
chr1 (221-262)||(16433176-16433217)
chr1 (224-264)||(23968621-23968661)
chr1 (220-264)||(35936836-35936880)
chr1 (249-325)||(37032416-37032492)
chr1 (259-295)||(39219361-39219397)
chr1 (105-150)||(45460157-45460204)
[»] chr3 (22 HSPs)
chr3 (43-147)||(10043401-10043505)
chr3 (112-264)||(30616288-30616437)
chr3 (168-264)||(23546949-23547040)
chr3 (168-264)||(44172616-44172707)
chr3 (168-264)||(44179316-44179407)
chr3 (168-263)||(39728661-39728751)
chr3 (220-264)||(48390824-48390868)
chr3 (181-264)||(10043289-10043367)
chr3 (253-324)||(39655182-39655253)
chr3 (169-264)||(4016051-4016141)
chr3 (253-323)||(7469688-7469758)
chr3 (168-206)||(34154404-34154442)
chr3 (220-264)||(44953442-44953486)
chr3 (249-324)||(1772308-1772383)
chr3 (257-320)||(10043195-10043258)
chr3 (168-264)||(34025944-34026035)
chr3 (168-264)||(39655280-39655371)
chr3 (168-264)||(49580054-49580145)
chr3 (168-205)||(22535902-22535939)
chr3 (170-264)||(44252739-44252828)
chr3 (223-264)||(49025720-49025761)
chr3 (222-262)||(43582616-43582656)
[»] scaffold0036 (1 HSPs)
scaffold0036 (169-264)||(33384-33474)
[»] chr6 (23 HSPs)
chr6 (168-264)||(5863390-5863481)
chr6 (168-264)||(27738762-27738853)
chr6 (168-264)||(32532530-32532621)
chr6 (168-264)||(32853834-32853925)
chr6 (169-264)||(2367317-2367407)
chr6 (168-264)||(3483930-3484021)
chr6 (168-264)||(32053078-32053169)
chr6 (253-323)||(3483833-3483903)
chr6 (175-262)||(14410864-14410946)
chr6 (253-322)||(10187991-10188060)
chr6 (223-264)||(18908933-18908974)
chr6 (179-261)||(29199895-29199972)
chr6 (220-260)||(20610993-20611033)
chr6 (184-264)||(28079703-28079778)
chr6 (220-264)||(30986290-30986334)
chr6 (168-264)||(10142525-10142616)
chr6 (168-264)||(12141375-12141466)
chr6 (214-261)||(20349095-20349142)
chr6 (253-324)||(30986361-30986432)
chr6 (253-323)||(31496542-31496612)
chr6 (253-323)||(31501928-31501998)
chr6 (223-264)||(14506126-14506167)
chr6 (220-256)||(9442467-9442503)
[»] chr5 (22 HSPs)
chr5 (168-264)||(4583109-4583200)
chr5 (168-264)||(4920816-4920907)
chr5 (254-325)||(10822447-10822518)
chr5 (185-264)||(10822534-10822608)
chr5 (168-264)||(15890197-15890287)
chr5 (168-264)||(17853301-17853391)
chr5 (249-323)||(2681320-2681394)
chr5 (112-150)||(10822647-10822685)
chr5 (168-262)||(12866561-12866650)
chr5 (186-263)||(23045000-23045072)
chr5 (184-261)||(28569032-28569104)
chr5 (168-260)||(22694913-22695000)
chr5 (168-206)||(1218745-1218783)
chr5 (257-323)||(4920938-4921004)
chr5 (168-206)||(10127071-10127109)
chr5 (168-206)||(12834635-12834673)
chr5 (249-327)||(23044898-23044976)
chr5 (223-292)||(27302714-27302784)
chr5 (253-323)||(33727912-33727982)
chr5 (220-261)||(33728012-33728053)
chr5 (223-264)||(38006477-38006518)
chr5 (236-324)||(18451833-18451921)
[»] scaffold0008 (2 HSPs)
scaffold0008 (249-323)||(67853-67927)
scaffold0008 (249-323)||(75696-75770)
[»] scaffold0244 (1 HSPs)
scaffold0244 (214-263)||(4589-4638)
[»] scaffold0022 (1 HSPs)
scaffold0022 (220-264)||(90634-90678)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 2e-88; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 4 - 264
Target Start/End: Complemental strand, 27056816 - 27056562
Alignment:
Q  4 agaaaaccaatattgaattaccagctttgtgagcagcgttgactgcttgagagagaatccagaaaagtaccgtctgacaatgacatctgccttttggact 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  27056816 agaaaaccaatattgaattaccagctttgtgagcagcgttgactgcttgagagagaatccagaaaagtgtcgtctgacaatgacatctgccttttggact 27056717  T
Q  104 ggagtgaaatgatctagggttgtgtttctatttatataaaaaggggtnnnnnnntaannnnnnnacatttgggacgagtatgggtatgggttcggggtgg 203  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||       |||       |||||||||||||||||| |||||||||||||||||    
T  27056716 ggagtgaaatgatctagcgttgtgtttctatttatataaaagggggtaaaaaagtaa-ttttttacatttgggacgagtatgtgtatgggttcggggtgg 27056618  T
Q  204 gtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |     |||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  27056617 g-----tagatataaccccgttacccgtcccatacctgtactttgaaatcgggaaaaaccc 27056562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 256 - 450
Target Start/End: Complemental strand, 27056532 - 27056336
Alignment:
Q  256 ggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaagaatcggtttgaacggattacagctttccgg 355  Q
    |||||||||||||||| | |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27056532 ggaaaacccgtcaaatcgagatgagtatgggcggatacccacgaggacgggtattgttgccatgcctaagaatcggtttgaacggattacagctttccgg 27056433  T
Q  356 ttcggcaaattgttcagtttggttggctcggtttgcccattttaggtcgcaaac--nnnnnnnnattaattcagagaatataatgaagttcttagta 450  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||          |||||||||||||||||||||||||||||||||    
T  27056432 ttcagcaaattgttcagtttggttggctcggtttgcccatttttggtcgcaaacttttttttttattaattcagagaatataatgaagttcttagta 27056336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 483 - 612
Target Start/End: Complemental strand, 27056304 - 27056175
Alignment:
Q  483 gatttattttctagatcttgaaaacatcaacaaataaaagtaaaatgcatctccagatcttctaatcaattgtaattaatgctttgcatgaggccaaatg 582  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27056304 gatttattttctggatctcgaaaacatcaacaaataaaagtaaaatgcatctccagatcttctaatcaattgtaattaatgctttgcatgaggccaaatg 27056205  T
Q  583 ttggtcgagcttggcaagattgggagagac 612  Q
    |||||| |||||||||||||||||||||||    
T  27056204 ttggtcaagcttggcaagattgggagagac 27056175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 112 - 264
Target Start/End: Complemental strand, 9642504 - 9642358
Alignment:
Q  112 atgatctagggttgtgtttctatttatataaaaaggggtnnnnnnntaannnnnnnacatttgggacgagtatgggtatgggttcggggtgggtagatta 211  Q
    |||||||||||||||||||||||||||||||||||||||       |||       |||||||||||| ||||| ||||||||||||| ||| || ||      
T  9642504 atgatctagggttgtgtttctatttatataaaaaggggtaaaaaaataatttttt-acatttgggacgggtatgagtatgggttcgggatggatatat-- 9642408  T
Q  212 gatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
       ||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  9642407 ---ataaccccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 9642358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 29108920 - 29108829
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| |||||||||||||||||||||||||| ||   |||||  ||||||||||||||||||||| |  ||| |||||||| |||||||    
T  29108920 acatttgggacgggtatgggtatgggttcggggtgggtacat---atata--cccgttacccgtcccatacccatgttttaaaatcgggaaaaaccc 29108829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 249 - 323
Target Start/End: Complemental strand, 15068572 - 15068498
Alignment:
Q  249 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||||||||||| ||| | ||| |||||||||||||| | | |||||| |||||||||||||||    
T  15068572 aaatcggggaaaacccgtcaaatcggggttggtttgggcgggtacccatgggcacgggttttgttgccatgccta 15068498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 39445674 - 39445583
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| ||||||||||| ||||||||||||||  |     |||| ||||||||| |||||||||||||  |||||||||||| |||||||    
T  39445674 acatttgggacgggtatgggtatgagttcggggtgggtacct-----ataaacccgttacctgtcccatacccgtgttttgaaatcgggaaaaaccc 39445583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 17469249 - 17469336
Alignment:
Q  172 ttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||| || |||||||||||| ||||||||||  |   |||||  |||||||||||||||||||||||  ||||||||||||||||||||    
T  17469249 ttgggacgggtttgggtatgggtttggggtgggtacct---atata--cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 17469336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 27932403 - 27932494
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||  |||| ||||||||||||||||||||  |   |||||  |||||||| ||||||||||||||  ||||||||||||||||||||    
T  27932403 acatttgggacggatatgagtatgggttcggggtgggtacct---atata--cccgttactcgtcccatacccgtgttttgaaatcggggaaaaccc 27932494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 32303051 - 32303142
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||||    
T  32303051 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaaccc 32303142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 9434978 - 9435016
Alignment:
Q  112 atgatctagggttgtgtttctatttatataaaaaggggt 150  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9434978 atgatctagggttgtgtttctatttatataaaaaggggt 9435016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 9642343 - 9642277
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatg 319  Q
    ||||||||||||||||||  ||||||||| ||| |||||||||| | ||||| ||||||||||||||    
T  9642343 cggggaaaacccgtcaaaccgggatgggtctggacgggtacccatggggacgagtattgttgccatg 9642277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 168 - 262
Target Start/End: Original strand, 45236055 - 45236144
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 262  Q
    |||||||||||| |||||| |||||||||||||||||||  |   |||||  ||| |||||||||||||||||||  ||||||||| ||||||||    
T  45236055 acatttgggacgggtatggatatgggttcggggtgggtacct---atata--cccattacccgtcccatacccgtgttttgaaatcagggaaaac 45236144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 8545447 - 8545356
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||||| || ||||||||||||||||||     ||  |||| ||||||||| ||| ||||||||||  ||||||||||| ||||||||    
T  8545447 acatttgggacgagtttgagtatgggttcggggtggg-----tatctatatccccgttactcgttccatacccgtgttttgaaatcggagaaaaccc 8545356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 20399583 - 20399673
Alignment:
Q  169 catttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||| |||||| || |||| ||||||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||||||||| ||||||||    
T  20399583 cattcgggacgggtttgggaatgggttcggggtgggtatct---atata--cccgttacccgtcccatacccgtgttttgaaatcggagaaaaccc 20399673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 15068639 - 15068594
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaacccg 265  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||    
T  15068639 cccgttacctgtcccgtacccgtattttgaaatcggggaaaacccg 15068594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 10297488 - 10297539
Alignment:
Q  213 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||| |||||||||| ||||| | |||||| ||||||||||||||||||||    
T  10297488 atatatccccgttacctgtcccgtccccgtattttgaaatcggggaaaaccc 10297539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 24927939 - 24928030
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  ||||||||||||| |||||||||  || || ||| ||||||||||    
T  24927939 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtctcatacccgtgtttcgagatcagggaaaaccc 24928030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 36274971 - 36275010
Alignment:
Q  105 gagtgaaatgatctagggttgtgtttctatttatataaaa 144  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  36274971 gagtgaaatgatttagggttgggtttctatttatataaaa 36275010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 24928057 - 24928127
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||||||||||| | |||  ||||||||| || || | | |||| |||||||||||||||    
T  24928057 cggggaaaacccgtcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttgttgccatgccta 24928127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 30481519 - 30481481
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggta 206  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  30481519 acattcgggacgagtttgggtatgggttcggggtgggta 30481481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 32303169 - 32303239
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||||||||||| | | |  ||||||||| ||||| | | |||| |||||||||||||||    
T  32303169 cggggaaaacccgtcaaattgggtttgtttcgggcgggtaaccacgggtatgggttttgttgccatgccta 32303239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 1012610 - 1012647
Alignment:
Q  169 catttgggacgagtatgggtatgggttcggggtgggta 206  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  1012610 cattcgggacgagtttgggtatgggttcggggtgggta 1012647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 9435153 - 9435218
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccat 318  Q
    ||||||| ||||||||||| ||| ||| | ||||||| |||||| | | |||||||||||||||||    
T  9435153 cggggaatacccgtcaaatcggggtggatttgggcggatacccatgggaacgggtattgttgccat 9435218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 1063544 - 1063588
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||| |||||||||||||||  |||||||||||| |||||||    
T  1063544 cccgttaaccgtcccatacccgtgttttgaaatcgggaaaaaccc 1063588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 5858703 - 5858659
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||||||||||||||  ||| |||||||| |||||||    
T  5858703 cccgttacccgtcccatacccgtgtttttaaatcgggaaaaaccc 5858659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 155; Significance: 6e-82; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 4 - 264
Target Start/End: Complemental strand, 5565569 - 5565314
Alignment:
Q  4 agaaaaccaatattgaattaccagctttgtgagcagcgttgactgcttgagagagaatccagaaaagtaccgtctgacaatgacatctgccttttggact 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5565569 agaaaaccaatattgaattaccagctttgtgagcagcgttgactgcttgagagagaatccagaaaagtgccgtctgacaatgacatctgccttttggact 5565470  T
Q  104 ggagtgaaatgatctagggttgtgtttctatttatataaaaaggggtnnnnnnntaannnnnnnacatttgggacgagtatgggtatgggttcggggtgg 203  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||         |       |||||||||| | ||||||||||||||| |||||||    
T  5565469 ggagtgaaatgatctagggttgtgtttctatttatataaaagggggtaaaaaaagtaattttttacatttgggatgtgtatgggtatgggttaggggtgg 5565370  T
Q  204 gtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |     || ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||    
T  5565369 g-----tacatataaccccgttacccatcccatatccgtactttgaaatcagggaaaaccc 5565314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 112 - 264
Target Start/End: Complemental strand, 10995982 - 10995841
Alignment:
Q  112 atgatctagggttgtgtttctatttatataaaaaggggtnnnnnnntaannnnnnnacatttgggacgagtatgggtatgggttcggggtgggtagatta 211  Q
    ||||| |||||||||||||||||||||||||||||||||        ||       |||||||| ||| |||||||||||||||||||||||||| ||      
T  10995982 atgatatagggttgtgtttctatttatataaaaaggggtaa------aaaaaaattacatttggaacgggtatgggtatgggttcggggtgggtatat-- 10995891  T
Q  212 gatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
       ||||||| ||||||||||||||||||||   |||||||||||||||||||    
T  10995890 ---ataaccctgttacccgtcccatacccgtgtcttgaaatcggggaaaaccc 10995841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 5565287 - 5565216
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaa 324  Q
    ||||||||| ||||||||| ||| |||||||||||||||||||| | ||||||||||||||| |||||||||    
T  5565287 cggggaaaatccgtcaaatcggggtgggtatgggcgggtacccatggggacgggtattgttgtcatgcctaa 5565216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 27896694 - 27896603
Alignment:
Q  50 ttgagagagaatccagaaaagtaccgtctgacaatgacatctgccttttggactggagtgaaatgatctagggttgtgtttctatttatata 141  Q
    ||||||||||| |||  |||||  |||||||||||||||| || | ||||||| |||||||||||||||||| |||||||| ||||||||||    
T  27896694 ttgagagagaacccatgaaagtgtcgtctgacaatgacatttgtcgtttggaccggagtgaaatgatctaggattgtgtttgtatttatata 27896603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 45380102 - 45380193
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||||| | |||||||||||||||||||||  |   |||||  |||||||||||||||||||||||| |||||||||||| |||||||    
T  45380102 acatttgggacgagtttaggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtattttgaaatcgggaaaaaccc 45380193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 10072461 - 10072552
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||  |||||||||||||||||||||||||  |   |||||  |||||||||||| ||||||||||  ||||||||||||||||||||    
T  10072461 acatttgggacggttatgggtatgggttcggggtgggtacct---atata--cccgttacccgttccatacccgtgttttgaaatcggggaaaaccc 10072552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 168 - 262
Target Start/End: Original strand, 33841073 - 33841162
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 262  Q
    |||||||||||| ||||| |||||||||||||||| ||| ||     ||||||  ||||||||||||||||||||  ||||||||||||||||||    
T  33841073 acatttgggacgggtatgagtatgggttcggggtgagtacat-----ataaccatgttacccgtcccatacccgtgttttgaaatcggggaaaac 33841162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 12980373 - 12980462
Alignment:
Q  169 catttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacc 263  Q
    ||||||||||| || |||||||||||||||||||||||  |   |||||  ||| |||||||||||||||||||  |||||||||||||||||||    
T  12980373 catttgggacgggtttgggtatgggttcggggtgggtactt---atata--cccattacccgtcccatacccgtgttttgaaatcggggaaaacc 12980462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 16866164 - 16866255
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||| ||||||||||||||  ||||| ||||||||||||||    
T  16866164 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttactcgtcccatacccgtgttttgagatcggggaaaaccc 16866255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 170 - 264
Target Start/End: Complemental strand, 18825968 - 18825879
Alignment:
Q  170 atttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||| | || |||||| ||||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||||||||||||||||||    
T  18825968 atttgggatgggtttgggtacgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 18825879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 3227044 - 3226953
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||| | ||||| ||||||||||||||||||||  |     |||  || ||||||||||||||||||||  ||||||||||||||||||||    
T  3227044 acatttgggatgtgtatgagtatgggttcggggtgggtacct-----atattcctgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 3226953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 18684009 - 18684061
Alignment:
Q  213 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacccg 265  Q
    ||||| ||| |||||||||||| |||||||| |||||||||||||||||||||    
T  18684009 atatatccctgttacccgtcccgtacccgtattttgaaatcggggaaaacccg 18684061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 27850377 - 27850333
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||||||||||||||  ||||||||||||||||||||    
T  27850377 cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 27850333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 17885460 - 17885551
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| ||||||||||||||||||||| || |  |   |||||  ||||||||||||||||||||| |  ||| ||||||||||||||||    
T  17885460 acatttgggacgggtatgggtatgggttcggggttggaacct---atata--cccgttacccgtcccatacccatgttttaaaatcggggaaaaccc 17885551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 21702654 - 21702745
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| ||  ||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||||    
T  21702654 acatttgggacgggttggggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaaccc 21702745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 31426043 - 31426094
Alignment:
Q  213 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||| |||||||||||||| |||||||||| ||| ||||||||||||||||    
T  31426043 atatatccccgttacccgtctcatacccgtatttttaaatcggggaaaaccc 31426094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 35074465 - 35074556
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||||||||||| ||||||  |   |||||  |||||||||||||||||||||||  ||| | ||||||||||||||    
T  35074465 acatttgggacgggtttgggtatgggttcgggttgggtacct---atata--cccgttacccgtcccatacccgtgttttaagatcggggaaaaccc 35074556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 39456112 - 39456022
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| ||||| |||||| |||||||||||||  |   |||||  ||||||||||||||||||||| |  ||||||||||||||||||||    
T  39456112 acatttgggacgggtatgagtatgg-ttcggggtgggtacct---atata--cccgttacccgtcccatacccatgttttgaaatcggggaaaaccc 39456022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 42908099 - 42908048
Alignment:
Q  213 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||| |||| ||||||||||| |||||||| ||||||||||||||||||||    
T  42908099 atatatccccattacccgtcccgtacccgtattttgaaatcggggaaaaccc 42908048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 43507440 - 43507531
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||||||| ||||||||||| |||||||| |  || |||    ||||||||||||| ||||||| |  ||||||||||||||||||||    
T  43507440 acatttgggacgagtataggtatgggttcagggtgggt-gcctatata----cccgttacccgtctcatacccatgttttgaaatcggggaaaaccc 43507531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 8906742 - 8906704
Alignment:
Q  112 atgatctagggttgtgtttctatttatataaaaaggggt 150  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  8906742 atgatctaaggttgtgtttctatttatataaaaaggggt 8906704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 3157119 - 3157168
Alignment:
Q  214 tataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacc 263  Q
    |||| |||||||| ||||||||||||| || |||||||||||||||||||    
T  3157119 tatatccccgttatccgtcccatacccatattttgaaatcggggaaaacc 3157168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 32546203 - 32546275
Alignment:
Q  184 tgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaa 261  Q
    ||||||||||||||||||||||| ||     ||| ||||||||||||| || |||||||| |||||||||||| ||||    
T  32546203 tgggtatgggttcggggtgggtacat-----atatccccgttacccgttccgtacccgtattttgaaatcgggaaaaa 32546275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 29015037 - 29014961
Alignment:
Q  187 gtatgggttcggggtgggtagat-tagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 262  Q
    ||||||||||||||||| || || || ||||| ||||| || ||||||| |||||||| |||||||||||| |||||    
T  29015037 gtatgggttcggggtggatatatatatatatatccccgctatccgtcccgtacccgtattttgaaatcgggaaaaac 29014961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 41103698 - 41103742
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||    
T  41103698 cccgttaaccgtcccatacccgtgttttgaaatcggggaaaaccc 41103742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 5377096 - 5377171
Alignment:
Q  184 tgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||||||||||||||  |   |||||  ||| |||||||||||||||| ||  ||||||||||||||||||||    
T  5377096 tgggtatgggttcggggtgggtacct---atata--ccctttacccgtcccatacctgtgttttgaaatcggggaaaaccc 5377171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 22973399 - 22973474
Alignment:
Q  184 tgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||||| |||||||| |   |||||  |||| ||||||||||| |||||||| |||||||||| |||||||||    
T  22973399 tgggtatgggttcgaggtgggtaca---gatat--ccccattacccgtcccgtacccgtattttgaaatcgtggaaaaccc 22973474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 8906565 - 8906503
Alignment:
Q  257 gaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatg 319  Q
    ||||||||||||||| ||  ||||| |||||||||||||| |   ||||||||||||||||||    
T  8906565 gaaaacccgtcaaatcggagtgggtttgggcgggtacccatggaaacgggtattgttgccatg 8906503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 17885578 - 17885648
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||||||||||| | |||  |||| |||| ||||| | | |||| |||||||||||||||    
T  17885578 cggggaaaacccgtcaaattgggtttggttcgggcaggtaaccacgggtatgggttttgttgccatgccta 17885648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 27896567 - 27896482
Alignment:
Q  174 gggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||| ||||||||||| ||||||||| |||  ||     |||||||||||||||||||||||||| |  ||||||||  ||||||||||    
T  27896567 gggacgggtatgggtatgagttcggggttggtgcat-----ataaccccgttacccgtcccatacccatgttttgaaataagggaaaaccc 27896482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 35074583 - 35074653
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||| ||||||| | |||  ||||||||| ||||| | | |||| |||||||||||||||    
T  35074583 cggggaaaacccgtctaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 35074653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 10072579 - 10072648
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcct 322  Q
    ||||||||||||||||||||||| | |||  ||||||||| || || | | |||| ||||||||||||||    
T  10072579 cggggaaaacccgtcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttgttgccatgcct 10072648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 10990908 - 10990871
Alignment:
Q  224 ttacccgtcccatacccgtactttgaaatcggggaaaa 261  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  10990908 ttacccgtcccgtacccgtattttgaaatcggggaaaa 10990871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 30839192 - 30839143
Alignment:
Q  213 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 262  Q
    ||||| || |||||| ||||||||||||||| ||||||||| ||||||||    
T  30839192 atatatccacgttactcgtcccatacccgtattttgaaatcagggaaaac 30839143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 16079055 - 16079099
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||||||||||||||  ||||| ||||| ||||||||    
T  16079055 cccgttacccgtcccatacccgtgttttgagatcggagaaaaccc 16079099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 28309534 - 28309578
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||||| |||||||| ||||||||| |||| |||||    
T  28309534 cccgttacccgtcccgtacccgtattttgaaatcagggagaaccc 28309578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 41741501 - 41741457
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||| ||||| |||||||||  ||||||||||||||||||||    
T  41741501 cccgttatccgtctcatacccgtgttttgaaatcggggaaaaccc 41741457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 44734337 - 44734269
Alignment:
Q  255 gggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||||||||| | |||  ||||||||| || |||| | | || |||||||||||||||    
T  44734337 gggaaaacccgtcaaattgggtttggttcgggcgggtaaccgcgagtatgagttttgttgccatgccta 44734269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 10301923 - 10302170
Alignment:
Q  11 caatattgaattaccagctttgtgagcagcgttgactgcttgagagagaatccagaaaagtaccgtctgacaatg-acatctgccttttggactggagtg 109  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||| ||||||    
T  10301923 caatattgaattaccagctttgtgagcagcgttaactgcttgagagagaatccagaaaagtgccgtctgacaatgaacatctcccttttggaccggagtg 10302022  T
Q  110 aaatgatctagggttgtgtttctatttatataaaaaggggtnnnnnnntaannnnnnnacatttgggacgagtatgggtatgggttcggggtgggtagat 209  Q
    ||||||||||||||||||||||||||||||||||| | |||       |||       ||||||||||||  |||||||||||||||||||||||         
T  10302023 aaatgatctagggttgtgtttctatttatataaaaggtggtaaaaaagtaa-ttttttacatttgggacggatatgggtatgggttcggggtggg----- 10302116  T
Q  210 tagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacc 263  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10302117 tacatataaccccgttacccgtctcatacccgtactttgaaatcggggaaaacc 10302170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 10302198 - 10302267
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcct 322  Q
    |||||||||||| |||||| ||  |||||||||||||||||||||| | |||||||||||||||||||||    
T  10302198 cggggaaaacccatcaaatcggagtgggtatgggcgggtacccacgggaacgggtattgttgccatgcct 10302267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 29527824 - 29527899
Alignment:
Q  184 tgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||||||||||||| ||     ||| |||||||||||||| | |||||||| ||||||||||||||||||||    
T  29527824 tgggtatgggttcggggtgggtacat-----atatccccgttacccgtcacgtacccgtattttgaaatcggggaaaaccc 29527899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 45275362 - 45275418
Alignment:
Q  74 cgtctgacaatgacatctgccttttggactggagtgaaatgatctagggttgtgttt 130  Q
    |||||||||||||||| || | ||||||| |||||||||||||||||||||||||||    
T  45275362 cgtctgacaatgacatttgtcgtttggaccggagtgaaatgatctagggttgtgttt 45275418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 5902713 - 5902622
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||||    
T  5902713 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaaccc 5902622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 6382371 - 6382280
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||| ||||| ||||||||    
T  6382371 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgttttgagatcggagaaaaccc 6382280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 7608966 - 7609057
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||||    
T  7608966 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaaccc 7609057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 43309519 - 43309570
Alignment:
Q  213 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||||||||||||||||||||  |||||||||||| |||||||    
T  43309519 atataaccccgttacccgtcccatacccgtgttttgaaatcgggaaaaaccc 43309570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 44317531 - 44317622
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||||    
T  44317531 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaaccc 44317622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 1724408 - 1724318
Alignment:
Q  169 catttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||| |||||| || |||||||||||||||||||||||  |   ||||||||  |||||||||||||||||| |  ||||||||||||||||||||    
T  1724408 cattcgggacgggtttgggtatgggttcggggtgggtacct---atataacc--gttacccgtcccatacccatgttttgaaatcggggaaaaccc 1724318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 3737720 - 3737758
Alignment:
Q  112 atgatctagggttgtgtttctatttatataaaaaggggt 150  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3737720 atgatctagggttgtgtttctatttatataaaaaggggt 3737758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 47550452 - 47550363
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 262  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  || ||||||||||||||||||||  ||||| ||||||||||||    
T  47550452 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cctgttacccgtcccatacccgtgttttgagatcggggaaaac 47550363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 32596236 - 32596192
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||||||||||||||  ||||||||||||||||||||    
T  32596236 cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 32596192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 11028069 - 11028160
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||  || |||||||| ||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||| ||||||||||||||    
T  11028069 acatttgggacaggtttgggtatgagttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 11028160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 12825512 - 12825469
Alignment:
Q  221 ccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||||||||||||  ||||||||||||||||||||    
T  12825512 ccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 12825469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 31752452 - 31752543
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| |||||||||||||||||||||||| |  |   |||||  | |||||| |||| |||||||||  ||||||||||||||||||||    
T  31752452 acatttgggacgggtatgggtatgggttcggggtgggaacct---atata--ctcgttactcgtctcatacccgtgttttgaaatcggggaaaaccc 31752543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 48459477 - 48459568
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||| | ||||||||||||||||||||||||||  |   |||||  || ||||||||| |||||||| |  ||||||||||||||||||||    
T  48459477 acatttgggatgggtatgggtatgggttcggggtgggtacct---atata--cctgttacccgttccatacccatgttttgaaatcggggaaaaccc 48459568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 6482133 - 6482043
Alignment:
Q  169 catttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||| || ||||||||||||||||||||||| ||   |||||  ||| |||| ||||||||||||||  ||| |||| |||||||||||    
T  6482133 catttgggacgggtttgggtatgggttcggggtgggtacat---atata--ccctttactcgtcccatacccgtgtttttaaattggggaaaaccc 6482043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 26564828 - 26564914
Alignment:
Q  169 catttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaa 260  Q
    ||||||||||| || ||||||||| |||||||||||||  |   |||||  ||||||||||||||||||||||   ||||||||||||||||    
T  26564828 catttgggacgggtttgggtatggtttcggggtgggtacct---atata--cccgttacccgtcccatacccgcgttttgaaatcggggaaa 26564914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 45065359 - 45065433
Alignment:
Q  249 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    |||| ||||||||| |||||||| ||| | ||| |||||||||||||| | | |||||| |||||||||||||||    
T  45065359 aaattggggaaaactcgtcaaatcggggttggtttgggcgggtacccatgggcacgggttttgttgccatgccta 45065433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 213 - 325
Target Start/End: Original strand, 31782649 - 31782768
Alignment:
Q  213 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc-------gtcaaattgggatgggtatgggcgggtacccacgaggacgg 305  Q
    ||||| |||||||||| || || |||||||| ||||||||||||||||||||       ||||||| | | | ||| |||||||||||||| | | ||||    
T  31782649 atatatccccgttacctgtaccgtacccgtattttgaaatcggggaaaacccaaacccagtcaaatcgaggttggtttgggcgggtacccatgggcacgg 31782748  T
Q  306 gtattgttgccatgcctaag 325  Q
     | |||||||||||||||||    
T  31782749 attttgttgccatgcctaag 31782768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 39375321 - 39375362
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaa 261  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  39375321 cccgttacccgtcctatacccgtattttgaaatcggggaaaa 39375362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 253 - 325
Target Start/End: Original strand, 37349226 - 37349298
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaag 325  Q
    ||||||||||| ||||||||||| | |||  ||||||||| ||||| | | |||| |||||||||||||||||    
T  37349226 cggggaaaacctgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctaag 37349298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 324
Target Start/End: Complemental strand, 1866534 - 1866459
Alignment:
Q  249 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaa 324  Q
    ||||||||||||| ||||||||| ||| | ||| |||||| ||||||||| | |||||| |||||| | |||||||    
T  1866534 aaatcggggaaaatccgtcaaatcggggttggtttgggcgagtacccacgtgcacgggttttgttgtcttgcctaa 1866459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 3737789 - 3737863
Alignment:
Q  185 gggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||||| |||||| ||     |||||| |||||||||||||||||||||  |||||||| ||| |||||||    
T  3737789 gggtatgggttcgggatgggtacat-----ataacctcgttacccgtcccatacccgtgttttgaaattgggaaaaaccc 3737863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 262
Target Start/End: Complemental strand, 15987359 - 15987272
Alignment:
Q  170 atttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 262  Q
    |||||||||| || |||||||||||||||||||||||   |  |||||  |||||||||| ||||||||||||  ||| ||||| ||||||||    
T  15987359 atttgggacgggtttgggtatgggttcggggtgggta---tctatata--cccgttacccatcccatacccgtgttttaaaatctgggaaaac 15987272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 31918657 - 31918566
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || ||||||||||||||||||||||| | || |||    ||| |||| ||||||||||||||  || || ||||||||||||||    
T  31918657 acatttgggacgggtttgggtatgggttcggggtgggta-actatata----cccattactcgtcccatacccgtgtttcgagatcggggaaaaccc 31918566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 41915055 - 41915004
Alignment:
Q  213 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||| ||||||||||| |||| ||||| || ||||||||||||||||||||    
T  41915055 atatatccccgttacccttcccgtacccatattttgaaatcggggaaaaccc 41915004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 10574416 - 10574370
Alignment:
Q  249 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtaccc 295  Q
    ||||||||||||||||||||||| ||||| | | |||||||||||||    
T  10574416 aaatcggggaaaacccgtcaaatcgggattgatttgggcgggtaccc 10574370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 43309426 - 43309464
Alignment:
Q  112 atgatctagggttgtgtttctatttatataaaaaggggt 150  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  43309426 atgatcttgggttgtgtttctatttatataaaaatgggt 43309464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 43893341 - 43893411
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||||||||||| | ||   ||||||||| ||||| | | |||| |||||||||||||||    
T  43893341 cggggaaaacccgtcaaattgggtttggctcgggcgggtaaccacgggtatgggttttgttgccatgccta 43893411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 10574478 - 10574430
Alignment:
Q  213 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaa 261  Q
    ||||| |||||||||||||||| |||| ||| | |||||||||||||||    
T  10574478 atatatccccgttacccgtcccgtacctgtattatgaaatcggggaaaa 10574430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 11173020 - 11173060
Alignment:
Q  224 ttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||| ||||| |||||||| ||||||||||||||||||||    
T  11173020 ttacctgtcccgtacccgtattttgaaatcggggaaaaccc 11173060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 10212273 - 10212380
Alignment:
Q  43 tgactgcttgagagagaatccagaaaagtaccgtctgacaatgacatctgccttttggactggagtgaaatgatctagggttgtgtttctatttatataa 142  Q
    |||||||||||||||||| |||| ||| |  ||| |||||||||||||| |  |||||||| |||||||||||| ||||||||||||| |||||||||||    
T  10212273 tgactgcttgagagagaacccagcaaaatgtcgtgtgacaatgacatcttctgtttggactagagtgaaatgatatagggttgtgtttgtatttatataa 10212372  T
Q  143 aaaggggt 150  Q
    ||||||||    
T  10212373 aaaggggt 10212380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 256 - 319
Target Start/End: Original strand, 22900906 - 22900969
Alignment:
Q  256 ggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatg 319  Q
    |||||||||||||||| |||||||||  ||||||||||||| ||||||||||||||||||||||    
T  22900906 ggaaaacccgtcaaatcgggatgggttagggcgggtacccatgaggacgggtattgttgccatg 22900969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 112 - 264
Target Start/End: Original strand, 22900729 - 22900876
Alignment:
Q  112 atgatctagggttgtgtttctatttatataaaaaggggtnnnnnnntaannnnnnnacatttgggacgagtatgggtatgggttcggggtgggtagatta 211  Q
    ||||||||||||||||||||||||||| |||||||||||         |       || ||||||||| ||||||||||| |||||||||||||| ||      
T  22900729 atgatctagggttgtgtttctatttatgtaaaaaggggtaaaaaaaataattttttacgtttgggacgggtatgggtatgagttcggggtgggtatat-- 22900826  T
Q  212 gatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
       ||||||||||||| ||||||||||||||  |||||||||||| |||||||    
T  22900827 ---ataaccccgttactcgtcccatacccgtgttttgaaatcgggaaaaaccc 22900876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 15546735 - 15546826
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||| | |||||||||||||||| ||||||||| ||     ||||||  ||||||||||||||||||||  ||||||||||||||||||||    
T  15546735 acatttgggaagggtatgggtatgggttcagggtgggtatat-----ataaccatgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 15546826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 7314746 - 7314655
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || ||||||||||||||||||||| |  |   |||||  ||||||||||||||||||| |||| ||| ||||||||||||||||    
T  7314746 acatttgggacgggtgtgggtatgggttcggggtgggaacct---atata--cccgttacccgtcccatactcgtattttaaaatcggggaaaaccc 7314655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 24414230 - 24414140
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacc 263  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  || ||||||||||||||||||||  ||||| |||||||||||||    
T  24414230 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cctgttacccgtcccatacccgtgttttgagatcggggaaaacc 24414140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 10212520 - 10212585
Alignment:
Q  258 aaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||| |||||||| ||| |||||||||||||||||||||  | ||||||||||||| ||||||||    
T  10212520 aaaactcgtcaaatcggggtgggtatgggcgggtacccacaggtacgggtattgttgtcatgccta 10212585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 37106730 - 37106774
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||||||||||||||  ||||||||||||||||||||    
T  37106730 cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 37106774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 30846941 - 30847028
Alignment:
Q  172 ttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||||    
T  30846941 ttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaaccc 30847028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 30847055 - 30847126
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaa 324  Q
    ||||||||||||||||||||||| | |||  ||||||||| ||||| | | |||| ||||||||||||||||    
T  30847055 cggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctaa 30847126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 37999474 - 37999565
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||| ||||||||||||||  |   |||||  ||||||||||||| |||||||||  ||||| ||||||||||||||    
T  37999474 acatttgggacgggtttgggtatgagttcggggtgggtactt---atata--cccgttacccgtctcatacccgtgttttgagatcggggaaaaccc 37999565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 15546853 - 15546919
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatg 319  Q
    |||||||||| |||||||| ||| || || |||||||||||||| | ||| ||||||||||||||||    
T  15546853 cggggaaaactcgtcaaatgggggtgagtttgggcgggtacccatggggatgggtattgttgccatg 15546919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 38342601 - 38342528
Alignment:
Q  184 tgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 262  Q
    ||||||||||||||||||||||| ||     ||| |||||||||||||||| || ||||| ||| ||||||||||||||    
T  38342601 tgggtatgggttcggggtgggtacat-----atatccccgttacccgtcccgtatccgtattttaaaatcggggaaaac 38342528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 15546676 - 15546709
Alignment:
Q  112 atgatctagggttgtgtttctatttatataaaaa 145  Q
    ||||||||||||||||||||||||||||||||||    
T  15546676 atgatctagggttgtgtttctatttatataaaaa 15546709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 37472810 - 37472769
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaa 261  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  37472810 cccgttacccgtcccatacccgtgttttgaaatcggggaaaa 37472769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 39256431 - 39256370
Alignment:
Q  262 cccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    |||||||||||||| | ||| |||||||||||||| | | |||||| |||||||||||||||    
T  39256431 cccgtcaaattggggttggtttgggcgggtacccatgggcacgggttttgttgccatgccta 39256370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 43371584 - 43371633
Alignment:
Q  213 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 262  Q
    ||||| |||||||||||||||| |||||||| ||| ||||||||||||||    
T  43371584 atatatccccgttacccgtcccgtacccgtattttaaaatcggggaaaac 43371633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 14331534 - 14331609
Alignment:
Q  184 tgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||||| ||||||| ||     ||| ||||||||||||||||||||| ||| ||| |||| |||||||||||    
T  14331534 tgggtatgggttcggagtgggtacat-----atatccccgttacccgtcccatacctgtatttttaaataggggaaaaccc 14331609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 6027881 - 6027811
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||||||||||| | |||  |||||| || ||||||| | |||| |||||| ||||||||    
T  6027881 cggggaaaacccgtcaaattgggtttggttcgggcggataaccacgagtatgggttttgttgtcatgccta 6027811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 26755845 - 26755919
Alignment:
Q  249 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    |||||||| |||||||||||||| ||| | ||| ||||| |||||||| | | |||||| |||||| ||||||||    
T  26755845 aaatcgggaaaaacccgtcaaatcggggttggtttgggcaggtacccatgggcacgggttttgttgtcatgccta 26755919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 38686514 - 38686641
Alignment:
Q  28 ctttgtgagcagcgttgactgcttgagagagaatccagaaaagtaccgtctgacaatgacatctgccttttggactggagtgaaatg-----atctaggg 122  Q
    ||||||||||   |||||||||||||||||||| ||||||||||  ||||||||| |||||||| || |||| ||||||||||||||     ||||||||    
T  38686514 ctttgtgagcgatgttgactgcttgagagagaacccagaaaagtgtcgtctgacagtgacatcttccatttgaactggagtgaaatgaaataatctaggg 38686613  T
Q  123 ttgtgtttctatttatataaaaaggggt 150  Q
    |||| ||| |||||||||| ||||||||    
T  38686614 ttgtctttgtatttatatagaaaggggt 38686641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 112 - 262
Target Start/End: Complemental strand, 10778721 - 10778576
Alignment:
Q  112 atgatctagggttgtgtttctatttatataaaaaggggtnnnnnnntaannnnnnnacatttgggacgagtatgggtatgggttcggggtgggtagatta 211  Q
    |||||||||||||||||||||||||||||||||||||||       ||        ||||||| |||| ||||| |||||||||||||||||      ||    
T  10778721 atgatctagggttgtgtttctatttatataaaaaggggtaaaaaaatattttttttacatttgagacgggtatgagtatgggttcggggtgg-----ata 10778627  T
Q  212 gatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 262  Q
      |||||||||||||||||||||||||||||  |||||||||||| |||||    
T  10778626 tctataaccccgttacccgtcccatacccgtgttttgaaatcgggaaaaac 10778576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 29936407 - 29936498
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||| ||||| ||||||||||||||    
T  29936407 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtattttgagatcggggaaaaccc 29936498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 114 - 264
Target Start/End: Original strand, 34085170 - 34085317
Alignment:
Q  114 gatctagggttgtgtttctatttatataaaaaggggtnnnnnnnta--annnnnnnacatttgggacgagtatgggtatgggttcggggtgggtagatta 211  Q
    |||||||||||||||||||||||||||||||||||||        |  |       |||||| ||||||||||||||||||||||||||||||     ||    
T  34085170 gatctagggttgtgtttctatttatataaaaaggggtaaaaaaaaaataattttttacatttaggacgagtatgggtatgggttcggggtggg-----ta 34085264  T
Q  212 gatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
     ||||||||||||||||| |||||||| |||  |||||||||||| |||||||    
T  34085265 catataaccccgttacccatcccatactcgtgttttgaaatcgggaaaaaccc 34085317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 18354178 - 18354087
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||||||||||||| ||||||||||||| |  |   |||||  ||||||||||||||||||||| |  ||||||||||||||||||||    
T  18354178 acatttgggacgagtatgggtatcggttcggggtgggaactt---atata--cccgttacccgtcccatacccatgttttgaaatcggggaaaaccc 18354087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 5181077 - 5181121
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  5181077 cccgttacccgtcccatacccgtattttgaaatcggggaaaaccc 5181121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 17134938 - 17135029
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||| ||||||||||||||||||||||||||||  ||||  |   |||||  ||||||||||||| |||||||||  ||||||||||||||||||||    
T  17134938 acatatgggacgagtatgggtatgggttcggggatggtacct---atata--cccgttacccgtctcatacccgtgttttgaaatcggggaaaaccc 17135029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 324
Target Start/End: Complemental strand, 19003650 - 19003575
Alignment:
Q  249 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaa 324  Q
    ||||||||||||||||||||||| ||| | | | |||||||||||||| | | |||||| ||||||||||||||||    
T  19003650 aaatcggggaaaacccgtcaaatcggggttgctttgggcgggtacccatgggcacgggttttgttgccatgcctaa 19003575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 19572610 - 19572519
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| ||||| ||||||||||||||||||||  |   |||||  ||||||||| |||||||||||||  |||||||||||| |||||||    
T  19572610 acatttgggacgggtatgagtatgggttcggggtgggtacct---atata--cccgttacctgtcccatacccgtgttttgaaatcgggaaaaaccc 19572519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 36187318 - 36187227
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || ||||||||||||| |||||||||  |   |||||  |||||||||||||||||||||||  ||||| ||||||||||||||    
T  36187318 acatttgggacgggtttgggtatgggttcagggtgggtacct---atata--cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 36187227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 168 - 262
Target Start/End: Original strand, 28297925 - 28298014
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 262  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||    
T  28297925 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaac 28298014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 19003724 - 19003672
Alignment:
Q  213 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacccg 265  Q
    ||||| |||||||| |||||||||||||||| |||| ||||||||||||||||    
T  19003724 atatatccccgttatccgtcccatacccgtattttgtaatcggggaaaacccg 19003672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 3628036 - 3627993
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaacc 263  Q
    |||||||||||||||||||||||  |||||||||||||||||||    
T  3628036 cccgttacccgtcccatacccgtgttttgaaatcggggaaaacc 3627993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 16237362 - 16237311
Alignment:
Q  213 atataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||| || ||||||||||||| |||||||| ||||||||||||||||||||    
T  16237362 atatatcctcgttacccgtcccttacccgtattttgaaatcggggaaaaccc 16237311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 23490869 - 23490778
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || | |||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||||    
T  23490869 acatttgggacgggttttggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaaccc 23490778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 51421849 - 51421940
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || ||||||||||||||||||||||| ||   |||||  |  ||||||||||||||||||||  ||||| |||||| |||||||    
T  51421849 acatttgggacgggtttgggtatgggttcggggtgggtacat---atata--catgttacccgtcccatacccgtgttttgagatcgggaaaaaccc 51421940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 20774675 - 20774745
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||| ||||||||||||| | |||  ||||||||| ||||||| | |||| |||||||||||||||    
T  20774675 cggggaaaatccgtcaaattgggtttggttcgggcgggtaaccacgagtatgggttttgttgccatgccta 20774745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 38686763 - 38686829
Alignment:
Q  257 gaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    |||||||||| |||| ||||||||||| |||||||||||||| | ||  ||||||||| ||||||||    
T  38686763 gaaaacccgtaaaatcgggatgggtataggcgggtacccacgggtacatgtattgttgtcatgccta 38686829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 44632189 - 44632139
Alignment:
Q  223 gttacccgtcccatacccgtactttgaaatcggggaaaacccgtcaaattg 273  Q
    ||||||||||||||||||||  ||||||||||| ||||||| |||||||||    
T  44632189 gttacccgtcccatacccgtgttttgaaatcggagaaaaccagtcaaattg 44632139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 24710885 - 24710929
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||    
T  24710885 cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 24710929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 10450061 - 10450014
Alignment:
Q  249 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtaccca 296  Q
    |||| |||||||||||||||||||||| | ||| ||||||||||||||    
T  10450061 aaattggggaaaacccgtcaaattggggttggtttgggcgggtaccca 10450014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 13390404 - 13390442
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggta 206  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  13390404 acatttgggacgggtatgggtatgagttcggggtgggta 13390442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 23966864 - 23966902
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggta 206  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  23966864 acatttgggacgggtatgagtatgggttcggggtgggta 23966902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 29936531 - 29936601
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||||||||||| | |||  ||||||||| ||||| | | |||| |||||| ||||||||    
T  29936531 cggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgtcatgccta 29936601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 33293588 - 33293538
Alignment:
Q  214 tataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||| |||| |||||||||||||||||||  |||||||||||| |||||||    
T  33293588 tatatccccattacccgtcccatacccgtgttttgaaatcgggaaaaaccc 33293538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 42707888 - 42707846
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaac 262  Q
    |||||||||||||||||||||||  ||||||||||| ||||||    
T  42707888 cccgttacccgtcccatacccgtgttttgaaatcggagaaaac 42707846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 16408983 - 16409024
Alignment:
Q  223 gttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||||||||||  |||||||| |||||||||||    
T  16408983 gttacccgtcccatacccgtgttttgaaattggggaaaaccc 16409024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 16433217 - 16433176
Alignment:
Q  221 ccgttacccgtcccatacccgtactttgaaatcggggaaaac 262  Q
    ||||||||||||||||||||||  ||||||||||| ||||||    
T  16433217 ccgttacccgtcccatacccgtgttttgaaatcggagaaaac 16433176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 23968621 - 23968661
Alignment:
Q  224 ttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||||||||||  ||||||| ||||||||||||    
T  23968621 ttacccgtcccatacccgtgttttgaaaccggggaaaaccc 23968661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 35936880 - 35936836
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||| ||||||||||| |||  ||||||||||||||||||||    
T  35936880 cccgttatccgtcccatactcgtgatttgaaatcggggaaaaccc 35936836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 249 - 325
Target Start/End: Original strand, 37032416 - 37032492
Alignment:
Q  249 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaag 325  Q
    ||||| || ||||||||||||||  |||| ||| | ||||| || ||| ||| |||||| |||||||||||||||||    
T  37032416 aaatcaggaaaaacccgtcaaatcaggattggtttcggcggatatccatgagcacgggttttgttgccatgcctaag 37032492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 39219361 - 39219397
Alignment:
Q  259 aaacccgtcaaattgggatgggtatgggcgggtaccc 295  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  39219361 aaacccgtcaaattgggattggtttgggcgggtaccc 39219397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 45460204 - 45460157
Alignment:
Q  105 gagtgaaatgatctaggg--ttgtgtttctatttatataaaaaggggt 150  Q
    |||||||||||| |||||  || |||||||||||||||||||||||||    
T  45460204 gagtgaaatgatttaggggtttatgtttctatttatataaaaaggggt 45460157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 10043505 - 10043401
Alignment:
Q  43 tgactgcttgagagagaatccagaaaagtaccgtctgacaatgacatctgccttttggactggagtgaaatgatctagggttgtgtttctatttatataa 142  Q
    ||||||||||||||| || ||| ||||||  |||||||||||||||| || | || ||||  ||||||||||||||||| |||||||| |||||||||||    
T  10043505 tgactgcttgagagaaaacccataaaagtgtcgtctgacaatgacatttgtcgttcggaccagagtgaaatgatctaggtttgtgtttgtatttatataa 10043406  T
Q  143 aaagg 147  Q
    |||||    
T  10043405 aaagg 10043401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 112 - 264
Target Start/End: Complemental strand, 30616437 - 30616288
Alignment:
Q  112 atgatctagggttgtgtttctatttatataaaaaggggtnnnnnnnta--annnnnnnacatttgggacgagtatgggtatgggttcggggtgggtagat 209  Q
    |||||||||||||||||||||||||||||||||||||||        |  |       || ||||||||| |||||||||||||||||||||||     |    
T  30616437 atgatctagggttgtgtttctatttatataaaaaggggtaaaaaaaaaataattttttacgtttgggacgggtatgggtatgggttcggggtgg-----t 30616343  T
Q  210 tagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    || |||||||| |||||||||||||||| ||||  ||||||||||||||||||||    
T  30616342 tatatataacctcgttacccgtcccatatccgtgttttgaaatcggggaaaaccc 30616288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 23547040 - 23546949
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||||| |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  || || ||||||||||||||    
T  23547040 acatttgggacgagtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgtttcgagatcggggaaaaccc 23546949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 44172616 - 44172707
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||| ||||||||||||||    
T  44172616 acatttgggacgggtttgggtatgggttcggggtgggtactt---atata--cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 44172707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 44179316 - 44179407
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||| ||||||||||||||    
T  44179316 acatttgggacgggtttgggtatgggttcggggtgggtactt---atata--cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 44179407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 39728661 - 39728751
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacc 263  Q
    |||||||||||| || |||||||||||||||||||||||  ||| |||    |||||||||| ||||||||||||| ||||| |||| ||||||||    
T  39728661 acatttgggacgggtttgggtatgggttcggggtgggta-cttatata----cccgttacccatcccatacccgtattttgagatcgaggaaaacc 39728751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 48390868 - 48390824
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||||||||||||||  ||||||||||||||||||||    
T  48390868 cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 48390824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 10043367 - 10043289
Alignment:
Q  181 gtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||||||||||||||||  ||     |||||||||||||||||||||||||| |  ||||||| | ||||||||||    
T  10043367 gtatgggtatgggttcggggtgggtgcat-----ataaccccgttacccgtcccatacccatgttttgaaaccagggaaaaccc 10043289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 39655253 - 39655182
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaa 324  Q
    ||||||||||||||||||||||| | |||  ||||||||| ||||| | | |||| ||||||||||||||||    
T  39655253 cggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctaa 39655182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 4016141 - 4016051
Alignment:
Q  169 catttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||| ||||||||| ||||||||||||||| |||||||  |   |||||  ||||||| ||||||||||||| |  ||||||||||||||||||||    
T  4016141 cattcgggacgagtttgggtatgggttcggagtgggtacct---atata--cccgttatccgtcccatacccatgttttgaaatcggggaaaaccc 4016051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 7469758 - 7469688
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||||||||||| | |||  ||||||||| ||||| | | |||| |||||||||||||||    
T  7469758 cggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 7469688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 34154404 - 34154442
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggta 206  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  34154404 acatttgggacgggtatgggtatgggttcggggtgggta 34154442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 44953486 - 44953442
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||    
T  44953486 cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 44953442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 324
Target Start/End: Complemental strand, 1772383 - 1772308
Alignment:
Q  249 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaa 324  Q
    ||||||||||||| ||||||||| ||||| ||| ||||| |||||||| | | ||  || ||||||||||||||||    
T  1772383 aaatcggggaaaatccgtcaaatcgggattggtttgggcaggtacccatgggcacatgttttgttgccatgcctaa 1772308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 10043258 - 10043195
Alignment:
Q  257 gaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgc 320  Q
    ||||||||||||||||||| | ||||||| ||||||||||||   ||| ||||||||| |||||    
T  10043258 gaaaacccgtcaaattggggttggtatggtcgggtacccacggatacgagtattgttgtcatgc 10043195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 34025944 - 34026035
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| ||||||||||| |||||||||||  |  |   |||||  | |||||||||||||||||| ||  ||||||||||||||||||||    
T  34025944 acatttgggacgggtatgggtatgagttcggggtggaaacct---atata--ctcgttacccgtcccatacctgtgttttgaaatcggggaaaaccc 34026035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 39655371 - 39655280
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||| |||| || |||||||||||| ||||||||||  |   |||||  || ||||||||||||||||||||  ||||| ||||||||||||||    
T  39655371 acatttgagacgggtttgggtatgggtttggggtgggtacct---atata--cctgttacccgtcccatacccgtgttttgagatcggggaaaaccc 39655280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 49580054 - 49580145
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || || ||||||||||| ||||||||  |   |||||  | |||||||||||||||||||||  ||||| ||||||||||||||    
T  49580054 acatttgggacgggtttgagtatgggttcgaggtgggtacct---atata--ctcgttacccgtcccatacccgtgttttgagatcggggaaaaccc 49580145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 22535939 - 22535902
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggt 205  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  22535939 acatttaggacgagtatgtgtatgggttcggggtgggt 22535902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 264
Target Start/End: Original strand, 44252739 - 44252828
Alignment:
Q  170 atttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||| || |||||||||||||||||||||||  |   |||||  || ||||| ||||||||||||||  || || ||||||||||||||    
T  44252739 atttgggacgggtttgggtatgggttcggggtgggtacct---atata--cctgttacacgtcccatacccgtgtttcgagatcggggaaaaccc 44252828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 49025720 - 49025761
Alignment:
Q  223 gttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||||||||||  ||||| ||||||||||||||    
T  49025720 gttacccgtcccatacccgtgttttgagatcggggaaaaccc 49025761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 43582616 - 43582656
Alignment:
Q  222 cgttacccgtcccatacccgtactttgaaatcggggaaaac 262  Q
    ||||||||||| |||||||||  ||||||||||||||||||    
T  43582616 cgttacccgtctcatacccgtgttttgaaatcggggaaaac 43582656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 33384 - 33474
Alignment:
Q  169 catttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||| ||||||||| ||||||||||||||||||||||| ||   |||||  |||||||||||||||||||||||  ||||||||||||||||||||    
T  33384 cattcgggacgagtttgggtatgggttcggggtgggtacat---atata--cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 33474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 5863481 - 5863390
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||||||||| ||||||||  |   |||||  |||||||||||||||||||||||  ||||||||||||||||||||    
T  5863481 acatttgggacgggtttgggtatgggttcgaggtgggtatct---atata--cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 5863390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 27738762 - 27738853
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || ||||||||||||||||||||||| ||   ||||| |   ||||||||||||||||||||  ||||||||||||||||||||    
T  27738762 acatttgggacgggtttgggtatgggttcggggtgggtacat---atatatct--gttacccgtcccatacccgtgttttgaaatcggggaaaaccc 27738853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 32532530 - 32532621
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| ||||| ||||||||||||||||||||  |   |||||  ||| |||||||||||||||||||  ||||||||||||||||||||    
T  32532530 acatttgggacgggtatgagtatgggttcggggtgggtacct---atata--cccattacccgtcccatacccgtgttttgaaatcggggaaaaccc 32532621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 32853834 - 32853925
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||| ||||||||||||||    
T  32853834 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 32853925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 2367317 - 2367407
Alignment:
Q  169 catttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||| ||||||||||||||    
T  2367317 catttgggacgggtttgggtatgggttcggggtgggtactt---atata--cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 2367407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 3484021 - 3483930
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  |||||||||| ||||||||||||  || || ||||||||||||||    
T  3484021 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccatcccatacccgtgtttcgagatcggggaaaaccc 3483930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 32053078 - 32053169
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||| ||||| || |||||||||||| |||||||||| ||   |||||  |||||||||||||||||| || |  ||||||||||||||||||||    
T  32053078 acattttggacgggtttgggtatgggtttggggtgggtacat---atata--cccgttacccgtcccatatccatgttttgaaatcggggaaaaccc 32053169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 3483903 - 3483833
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||||||||||| | |||  ||||||||| ||| ||| | |||| |||||||||||||||    
T  3483903 cggggaaaacccgtcaaattgggtttggttcgggcgggtaaccatgagtatgggttttgttgccatgccta 3483833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 262
Target Start/End: Complemental strand, 14410946 - 14410864
Alignment:
Q  175 ggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 262  Q
    ||||| || |||||||||||||||||||||||  |   |||||  |||||||||||||||||||||||  ||||||||| ||||||||    
T  14410946 ggacgggtttgggtatgggttcggggtgggtacct---atata--cccgttacccgtcccatacccgtgttttgaaatctgggaaaac 14410864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 10188060 - 10187991
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcct 322  Q
    ||||||||||||||||||||||| | |||  ||||||||| ||||| | | |||| ||||||||||||||    
T  10188060 cggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcct 10187991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 18908933 - 18908974
Alignment:
Q  223 gttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  18908933 gttacccgtcccatatccgtattttgaaatcggggaaaaccc 18908974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 29199972 - 29199895
Alignment:
Q  179 gagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaa 261  Q
    |||| ||||||||||||||||||    |||| | ||||| ||| |||||||||||| |||||||| |||||||||||||||||    
T  29199972 gagtttgggtatgggttcggggt----agat-acatatatccctgttacccgtcccgtacccgtattttgaaatcggggaaaa 29199895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 20611033 - 20610993
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaa 260  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  20611033 cccgttacccgtcccctacccgtattttgaaatcggggaaa 20610993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 28079778 - 28079703
Alignment:
Q  184 tgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||||||||||||||  |     ||| |||||||||||||||| ||||| |  ||||||||||||||||||||    
T  28079778 tgggtatgggttcggggtgggtacct-----atatccccgttacccgtcccgtacccatgttttgaaatcggggaaaaccc 28079703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 30986290 - 30986334
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||    
T  30986290 cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 30986334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 10142616 - 10142525
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||  || |||||||| ||||||||||||||  |   |||||  ||||||||| |||||||||||||  ||||| ||||||||||||||    
T  10142616 acatttgggacaggtttgggtatgagttcggggtgggtacct---atata--cccgttacctgtcccatacccgttttttgagatcggggaaaaccc 10142525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 12141375 - 12141466
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||||||||||||||||||  |   |||||  ||||| |||||||||||| ||||  ||||| || |||||||||||    
T  12141375 acatttgggacgggtttgggtatgggttcggggtgggtacct---atata--cccgtcacccgtcccatatccgtgttttgagattggggaaaaccc 12141466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 20349095 - 20349142
Alignment:
Q  214 tataaccccgttacccgtcccatacccgtactttgaaatcggggaaaa 261  Q
    |||| ||||||||| ||||||||||||||  |||||||||||||||||    
T  20349095 tatatccccgttactcgtcccatacccgtgttttgaaatcggggaaaa 20349142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 30986361 - 30986432
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaa 324  Q
    ||||||||||||||||||||| | | |||  ||||||||| ||||| | | |||| ||||||||||||||||    
T  30986361 cggggaaaacccgtcaaattgagtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctaa 30986432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 31496542 - 31496612
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||||||||| | | ||| ||| |||||| ||||| | | |||| |||||||||||||||    
T  31496542 cggggaaaacccgtcaaattgagtttggtttggacgggtaaccacgggtatgggttttgttgccatgccta 31496612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 31501928 - 31501998
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||||||||| | | ||| ||| |||||| ||||| | | |||| |||||||||||||||    
T  31501928 cggggaaaacccgtcaaattgagtttggtttggacgggtaaccacgggtatgggttttgttgccatgccta 31501998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 14506126 - 14506167
Alignment:
Q  223 gttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||||||||||||| ||  ||||||||||||||||||||    
T  14506126 gttacccgtcccatacctgtgttttgaaatcggggaaaaccc 14506167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 9442467 - 9442503
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggg 256  Q
    |||||||||||||||||||||||  ||||||||||||    
T  9442467 cccgttacccgtcccatacccgtgttttgaaatcggg 9442503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 4583109 - 4583200
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| ||||||||||||||| |||||||| |  |   |||||  |||||||||||||||||||||||  ||||||||||||||||||||    
T  4583109 acatttgggacgggtatgggtatgggtttggggtgggaacct---atata--cccgttacccgtcccatacccgtgttttgaaatcggggaaaaccc 4583200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 4920816 - 4920907
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| || |||||||||||||||||||| ||  |   |||||  |||||||||||||||||||||||  ||||| ||||||||||||||    
T  4920816 acatttgggacgggtttgggtatgggttcggggtggatacct---atata--cccgttacccgtcccatacccgtgttttgagatcggggaaaaccc 4920907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 10822518 - 10822447
Alignment:
Q  254 ggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaag 325  Q
    |||||||||||||||||| | | ||||| |||||||||||||| | |||| ||||||||||||||| |||||    
T  10822518 ggggaaaacccgtcaaatcgaggtgggtttgggcgggtacccatggggacaggtattgttgccatgtctaag 10822447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 10822608 - 10822534
Alignment:
Q  185 gggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||||||||||||| ||     ||||||||||||||||||| ||||||||  ||||||||||| ||||||||    
T  10822608 gggtatgggttcggggtgggtacat-----ataaccccgttacccgtcctatacccgtgttttgaaatcggagaaaaccc 10822534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 15890197 - 15890287
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| ||||||||||||||||||| ||||||  |   |||||  |||||||||||||||||||||||  ||||||||||| ||||||||    
T  15890197 acatttgggacgggtatgggtatgggttcggg-tgggtacct---atata--cccgttacccgtcccatacccgtgttttgaaatcggagaaaaccc 15890287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 17853391 - 17853301
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    |||||||||||| |||||||||||||||||| |||||||  |   ||||| ||  ||||||||||||||||||||  ||||||||||||||||||||    
T  17853391 acatttgggacgggtatgggtatgggttcggagtgggtatct---atatatcc--gttacccgtcccatacccgt-gtttgaaatcggggaaaaccc 17853301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 2681320 - 2681394
Alignment:
Q  249 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||||||||||||| | | ||| ||| |||||||||| | | ||| || |||||||||||||||    
T  2681320 aaatcggggaaaacccgtcaaattgaggttggtttggacgggtacccatgggcacgagttttgttgccatgccta 2681394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 10822685 - 10822647
Alignment:
Q  112 atgatctagggttgtgtttctatttatataaaaaggggt 150  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  10822685 atgatctaaggttgtgtttctatttatataaaaaggggt 10822647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 12866650 - 12866561
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaac 262  Q
    |||||||||||| ||||||||||||||||| ||||||||  |   |||||  || |||||||||||||||||| |  ||||||||||| ||||||    
T  12866650 acatttgggacgggtatgggtatgggttcgcggtgggtacct---atata--cctgttacccgtcccatacccatgttttgaaatcggagaaaac 12866561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 23045072 - 23045000
Alignment:
Q  186 ggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacc 263  Q
    ||||||||||||||||||||| ||     ||| | ||||||||| |||| |||||||| |||||||||||||||||||    
T  23045072 ggtatgggttcggggtgggtacat-----atatctccgttacccatcccgtacccgtattttgaaatcggggaaaacc 23045000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 184 - 261
Target Start/End: Complemental strand, 28569104 - 28569032
Alignment:
Q  184 tgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaaa 261  Q
    |||||||||||||||||||||||  |     ||| |||||||||||||||| |||||| | |||||||||||||||||    
T  28569104 tgggtatgggttcggggtgggtacct-----atatccccgttacccgtcccgtacccgcattttgaaatcggggaaaa 28569032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 22695000 - 22694913
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggtagattagatataaccccgttacccgtcccatacccgtactttgaaatcggggaaa 260  Q
    |||||||||||| || |||||||||||||||||||||||  |    ||||  |||||||  ||||||||||||||| ||||| ||||||||||    
T  22695000 acatttgggacgggtttgggtatgggttcggggtgggtacct---ctata--cccgttagtcgtcccatacccgtattttgagatcggggaaa 22694913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 1218745 - 1218783
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggta 206  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  1218745 acatttgggacgggtatgggtatgggttcggagtgggta 1218783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 4920938 - 4921004
Alignment:
Q  257 gaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||||||| | |||  ||||||||| ||||| | | |||| |||||||||||||||    
T  4920938 gaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 4921004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 10127071 - 10127109
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggta 206  Q
    |||||||||||| || |||||||||||||||||||||||    
T  10127071 acatttgggacgggtttgggtatgggttcggggtgggta 10127109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 12834673 - 12834635
Alignment:
Q  168 acatttgggacgagtatgggtatgggttcggggtgggta 206  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  12834673 acatttgggacgggtatgggtatgggttcggggtaggta 12834635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 23044976 - 23044898
Alignment:
Q  249 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaagaa 327  Q
    |||| ||| |||||||||||||| ||| | ||| |||||||||||||| | | |||| | || ||||||||||||||||    
T  23044976 aaattgggaaaaacccgtcaaatcggggttggtttgggcgggtacccatgtgcacggatttttttgccatgcctaagaa 23044898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 27302784 - 27302714
Alignment:
Q  223 gttacccgtcccatacccgtactttgaaatcggggaaaa-cccgtcaaattgggatgggtatgggcgggta 292  Q
    |||| ||||| |||| ||||  ||||||||||||||||| |||||||||||||||| ||| ||| ||||||    
T  27302784 gttatccgtctcatatccgtgttttgaaatcggggaaaatcccgtcaaattgggattggtttggacgggta 27302714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 33727982 - 33727912
Alignment:
Q  253 cggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||| ||||||||||||| | |||  ||||||||| ||||| | | |||| |||||||||||||||    
T  33727982 cggggaaaatccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 33727912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 33728053 - 33728012
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaa 261  Q
    |||||||||||||||||||||||  ||||| |||||||||||    
T  33728053 cccgttacccgtcccatacccgtgttttgagatcggggaaaa 33728012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 38006518 - 38006477
Alignment:
Q  223 gttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||| ||||||||||||||| |||||||| |||||||||||    
T  38006518 gttacgcgtcccatacccgtattttgaaattggggaaaaccc 38006477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 236 - 324
Target Start/End: Complemental strand, 18451921 - 18451833
Alignment:
Q  236 tacccgtactttgaaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgcctaa 324  Q
    |||| ||| ||| |||||||||||||||||||||| |||| | |||  || |||| ||||||| | | |||| |||||| |||||||||    
T  18451921 tacctgtattttcaaatcggggaaaacccgtcaaactgggtttggttcggacgggaacccacgtgtatgggttttgttgtcatgcctaa 18451833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 67853 - 67927
Alignment:
Q  249 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||| ||||||| ||| | ||| ||||||||||| || | | |||||| |||||||||||||||    
T  67853 aaatcggggaaaacctgtcaaatcggggttggtttgggcgggtactcatgggcacgggttttgttgccatgccta 67927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 75696 - 75770
Alignment:
Q  249 aaatcggggaaaacccgtcaaattgggatgggtatgggcgggtacccacgaggacgggtattgttgccatgccta 323  Q
    ||||||||||||||| ||||||| ||| | ||| ||||||||||| || | | |||||| |||||||||||||||    
T  75696 aaatcggggaaaacctgtcaaatcggggttggtttgggcgggtactcatgggcacgggttttgttgccatgccta 75770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 4638 - 4589
Alignment:
Q  214 tataaccccgttacccgtcccatacccgtactttgaaatcggggaaaacc 263  Q
    |||| ||| |||||| |||||||||||||| |||||||| ||||||||||    
T  4638 tatatccctgttacctgtcccatacccgtattttgaaattggggaaaacc 4589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 90634 - 90678
Alignment:
Q  220 cccgttacccgtcccatacccgtactttgaaatcggggaaaaccc 264  Q
    ||||||| ||||| |||||||||  ||||||||||||||||||||    
T  90634 cccgttaaccgtctcatacccgtgttttgaaatcggggaaaaccc 90678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University