View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_high_18 (Length: 295)
Name: NF10197_high_18
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 11191897 - 11192028
Alignment:
| Q |
1 |
tttgcatcaattggaaggtcaaagcaatgattctgccaagacaacagagggcactgattctggttttaagaaaattcaactggatcaatcaatcagatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||| |
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| T |
11191897 |
tttgcatcaattggaaggtcaaagcaatgattctgccaagacaacagagggcactgattctggttttaagaaaattcaactgaatcaatccataagatat |
11191996 |
T |
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| Q |
101 |
gcttctgggcatcacattgacaacaggcttag |
132 |
Q |
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| T |
11191997 |
gcttctggggatcacattgacaacaggcttag |
11192028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 11192024 - 11192131
Alignment:
| Q |
173 |
cttagtagattacctccatgcagtgagtgtgatctatactatgtcaatcgggataccctattttcttatcacaaagatatatagtgaattattttttcaa |
272 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11192024 |
cttagtagattacctccatgtagtgagtgtgatctatactatgtcaatcgggataccctattttcttatcacaaag----atagtgaattattttttcag |
11192119 |
T |
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| Q |
273 |
caaatgatgtcc |
284 |
Q |
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|||||||||||| |
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| T |
11192120 |
caaatgatgtcc |
11192131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 10308401 - 10308332
Alignment:
| Q |
182 |
ttacctccatgcagtgagtgtgatctatactatgtcaatcgggataccctattttcttatcacaaagata |
251 |
Q |
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| T |
10308401 |
ttacctccatgtagtgagtgcgatctatactatgtcaatcgggataccctcttttcttatcacaaagata |
10308332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10308872 - 10308809
Alignment:
| Q |
1 |
tttgcatcaattggaaggtcaaagcaatgattctgccaagacaacagagggcactgattctggt |
64 |
Q |
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| T |
10308872 |
tttgcatcaactggaaggtcaaagcaacgattctgccaaggcaacagagggcactgattctggt |
10308809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 10308605 - 10308490
Alignment:
| Q |
62 |
ggttttaagaaaattcaactggatcaatcaatcagatatgcttctgggcatcacattgacaacaggcttagcacattacttttcttagatgtttcgaatg |
161 |
Q |
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||||||||||||||| ||||| | |||| |||||||||||||||||| ||| | |||| | | |||||| ||| |||||| |||||||||||| |||| |
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| T |
10308605 |
ggttttaagaaaattgaactgagtgaatccatcagatatgcttctggggatcccgttgaaagctggcttaatacactactttgcttagatgtttcaaatg |
10308506 |
T |
|
| Q |
162 |
cccttcttaatcttag |
177 |
Q |
| |
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|| | | ||||||||| |
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| T |
10308505 |
ccatccctaatcttag |
10308490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 38431025 - 38430968
Alignment:
| Q |
194 |
agtgagtgtgatctatactatgtcaatcgggataccctattttcttatcacaaagata |
251 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||| |
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| T |
38431025 |
agtgagtgtgatctatactatgtcaatcgggatactctattttcctaccacaaggata |
38430968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 38431239 - 38431141
Alignment:
| Q |
65 |
tttaagaaaattcaactggatcaatcaatcagatatgcttctgggcatcacattgacaacaggcttagcacattacttttcttagatgtttcgaatgcc |
163 |
Q |
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||||||||||| ||||| | |||| |||||||||||| ||||| ||| ||||| | | |||||| ||||||||||| |||||||||||| |||||| |
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| T |
38431239 |
tttaagaaaatagaactgagtgaatccatcagatatgctcctggggatcctattgaaagctggcttaacacattactttgcttagatgtttcaaatgcc |
38431141 |
T |
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