View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10197_high_21 (Length: 277)
Name: NF10197_high_21
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 7717119 - 7717367
Alignment:
| Q |
18 |
catagaagttaagttattacaatcatccaactcaagatgtctaagacttaccaacttccagatatctttgggcaactctctcaagtgaatacacgaattg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
7717119 |
catagaagttaagttattacaatcatccaactcaagatgtctaagacttaccaacttccaaatatctttgggcaactctctcaagtgactacacgaattg |
7717218 |
T |
|
| Q |
118 |
agcaaacgagtctccaagttaaataattgagttattgaccttgggagctcttcaaccttataacaatgagaaagatcaagatagcttagatgtttcatcc |
217 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
7717219 |
agcaaaagagtctccaagttaaataattgagttatagacctt-ggagctcttcaaccttataacaatgagaaagatcacaatatcttagatgtttcatcc |
7717317 |
T |
|
| Q |
218 |
ttccaatactagatggaatcttcgttgactttgtgttggtaagattcatc |
267 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7717318 |
ttccaatactagatggaatcttcgttgactttgtgttggtaagattcatc |
7717367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 7720949 - 7721198
Alignment:
| Q |
18 |
catagaagttaagttattacaatcatccaactcaagatgtctaagacttaccaacttccagatatctttgggcaactctctcaagtgaatacacgaattg |
117 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||||||||| |||||||||||||||| | | ||||||||||||||||||||| | | ||| ||||| |
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| T |
7720949 |
catagaagttaagtcatggcaataatccaactcaagatgtcgaagacttaccaacttctaaagatctttgggcaactctctcaatttagaacaaaaattg |
7721048 |
T |
|
| Q |
118 |
agcaaacgagtctccaagttaaataattgagttattgaccttgggagctcttcaaccttataacaatgagaaagatcaagatagcttagatgtttcatcc |
217 |
Q |
| |
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|| ||| ||||||||||||||| ||||| |||||| |||||||||||||| |||||| ||| |||| |||||| |||||||| |||||||||||||||| |
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| T |
7721049 |
agtaaaagagtctccaagttaattaattcagttatagaccttgggagctcctcaaccatatcacaacaagaaaggtcaagatatcttagatgtttcatcc |
7721148 |
T |
|
| Q |
218 |
ttccaatactagatggaatcttcgttgactttgtgttggtaagattcatc |
267 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7721149 |
ttccaatactagatggaatcttcgttgactttgtgttggtaagattcatc |
7721198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 7521518 - 7521291
Alignment:
| Q |
18 |
catagaagttaagttattacaatcatccaactcaagatgtctaagacttaccaacttccagatatctttgggcaactctctcaagtgaatacacgaattg |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| | | |||| |||| |
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|
| T |
7521518 |
catagaagttaagttatcacaatcatccaactcaagatgtctaagaattaccaacttccaaagatctttgggcaactctctcaatttagaacacctattg |
7521419 |
T |
|
| Q |
118 |
agcaaacgagtctccaagttaaataattgagttattgaccttgggagctcttcaaccttataacaatgagaaagatcaagatagcttagatgtttcatcc |
217 |
Q |
| |
|
|| ||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||||| | |
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| T |
7521418 |
agtaaaagagtctccaagttaactaattcagttatagaccttgggagctcttcaaccttaaaacaacaagaaagatcaagataccttagctgtttcattc |
7521319 |
T |
|
| Q |
218 |
ttccaatactagatggaatcttcgttga |
245 |
Q |
| |
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| ||||||| ||||||||| |||||||| |
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|
| T |
7521318 |
taccaatacaagatggaatattcgttga |
7521291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 7127674 - 7127899
Alignment:
| Q |
18 |
catagaagttaagttattacaatcatccaactcaagatgtctaagacttaccaacttccagatatctttgggcaactctctcaagtgaatacacgaattg |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| |||| | | |||| |||| |
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|
| T |
7127674 |
catagaagttaagttatcacaatcatccaactcaagatgtctaaggcttaccaacttccaaagatctttgggcaactctttcaatttagaacacctattg |
7127773 |
T |
|
| Q |
118 |
agcaaacgagtctccaagttaaataattgagttattgaccttgggagctcttcaaccttataacaatgagaaagatcaagatagcttagatgtttcatcc |
217 |
Q |
| |
|
|| ||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||| || ||||| ||||||||||||||| ||||| |||||||| | |
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| T |
7127774 |
agtaaaagagtctccaagttaactaattcagttatagaccttgggagctcttcaaccataaaacaacaagaaagatcaagataccttagctgtttcattc |
7127873 |
T |
|
| Q |
218 |
ttccaatactagatggaatcttcgtt |
243 |
Q |
| |
|
| ||||||| ||||||||| |||||| |
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|
| T |
7127874 |
taccaatacaagatggaatattcgtt |
7127899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 7495860 - 7495635
Alignment:
| Q |
18 |
catagaagttaagttattacaatcatccaactcaagatgtctaagacttaccaacttccagatatctttgggcaactctctcaagtgaatacacgaattg |
117 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | | |||| |||| |
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|
| T |
7495860 |
catagaagttaagttatgacaaagatccaactcaagatgtctaagacttaccaacttccaaagatctttgggcaactctctcaatttagaacacctattg |
7495761 |
T |
|
| Q |
118 |
agcaaacgagtctccaagttaaataattgagttattgaccttgggagctcttcaaccttataacaatgagaaagatcaagatagcttagatgtttcatcc |
217 |
Q |
| |
|
|| ||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||| || ||||| ||||||||||||||| ||||| |||||||| | |
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|
| T |
7495760 |
agtaaaagagtctccaagttaactaattcagttatagaccttgggagctcttcaaccataaaacaacaagaaagatcaagataccttagctgtttcattc |
7495661 |
T |
|
| Q |
218 |
ttccaatactagatggaatcttcgtt |
243 |
Q |
| |
|
| ||||||| ||||||||| |||||| |
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| T |
7495660 |
taccaatacaagatggaatattcgtt |
7495635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 7529583 - 7529358
Alignment:
| Q |
18 |
catagaagttaagttattacaatcatccaactcaagatgtctaagacttaccaacttccagatatctttgggcaactctctcaagtgaatacacgaattg |
117 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| | | |||| |||| |
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|
| T |
7529583 |
catagaagttaagttatgacaataatccaactcaagatgtctaagacttactaacttccaaagatctttgggcaactctctcaatttagaacacctattg |
7529484 |
T |
|
| Q |
118 |
agcaaacgagtctccaagttaaataattgagttattgaccttgggagctcttcaaccttataacaatgagaaagatcaagatagcttagatgtttcatcc |
217 |
Q |
| |
|
|| ||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||| || ||||| ||||||||||||||| ||||| |||||||| | |
|
|
| T |
7529483 |
agtaaaagagtctccaagttaactaattcagttatagaccttgggagctcttcaaccataaaacaacaagaaagatcaagataccttagctgtttcattc |
7529384 |
T |
|
| Q |
218 |
ttccaatactagatggaatcttcgtt |
243 |
Q |
| |
|
| ||||||| ||||||||| |||||| |
|
|
| T |
7529383 |
taccaatacaagatggaatattcgtt |
7529358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 7483461 - 7483234
Alignment:
| Q |
18 |
catagaagttaagttattacaatcatccaactcaagatgtctaagacttaccaacttccagatatctttgggcaactctctcaagtgaatacacgaattg |
117 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||||||| ||||| |||||| | ||||| | |||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
7483461 |
catagaagttaagtcatcacaataatccaactcaagatgcctaagtcttacccatttccaaagatctttgggcaactctttcaagtgagtacaccaatta |
7483362 |
T |
|
| Q |
118 |
agcaaacgagtctccaagttaaataattgagttattgaccttgggagctcttcaaccttataacaatgagaaagatcaagatagcttagatgtttcatcc |
217 |
Q |
| |
|
|| ||| ||||||||||||||| ||| | ||||||||||||||||||||| |||||| | ||||| |||||| |||||||| |||||||||||||| | |
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|
| T |
7483361 |
agtaaaagagtctccaagttaactaaatcagttattgaccttgggagctcctcaaccattctacaataagaaaggtcaagataccttagatgtttcattc |
7483262 |
T |
|
| Q |
218 |
ttccaatactagatggaatcttcgttga |
245 |
Q |
| |
|
| ||||||| ||||||||| ||| |||| |
|
|
| T |
7483261 |
taccaatacaagatggaatattctttga |
7483234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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