View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_high_31 (Length: 208)
Name: NF10197_high_31
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 39489059 - 39488878
Alignment:
| Q |
14 |
atgaagatgcgtgaatgggctactgctgttgcatcaaacaatgaaaccaatgctaatcttagagtttcagagatacttctcatcatggatcataatcatc |
113 |
Q |
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| T |
39489059 |
atgaagatgcgtgaatgggctactgctgttgcatcaaacaatgaaaccaatgctaatcttagagtttcagagatacttctcatcatggatcataatcatc |
39488960 |
T |
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| Q |
114 |
ataaaatgccaggaaattgattaaagaagacacttgttcttagtttttggatattttttctgtaatttaatttgttctttct |
195 |
Q |
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| T |
39488959 |
ataaaatgccaggaaattgattaaagaagacacttgttcttagtttttggatattttttctgtaatttaatttgttctttct |
39488878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 39490627 - 39490526
Alignment:
| Q |
15 |
tgaagatgcgtgaatgggctactgctgttgcatcaaacaatgaaaccaatgctaatcttagagtttcagagatacttctcatcatggatcataatcatca |
114 |
Q |
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| T |
39490627 |
tgaagatgagggaatgggctagagcagttgcatcaaataatgaaactaaagctaatcttaaagtttcagagatatttcttattatggatcatcatcgtca |
39490528 |
T |
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| Q |
115 |
ta |
116 |
Q |
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| T |
39490527 |
ta |
39490526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 35774596 - 35774505
Alignment:
| Q |
14 |
atgaagatgcgtgaatgggctactgctgttgcatcaaacaatgaaaccaatgctaatcttagagtttcagagatacttctcatcatggatcat |
106 |
Q |
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| T |
35774596 |
atgaagatgtgtgaatgggctactactgttgtatcaaacaatgaatccaatgctaatatta-agtttcagagatacttctcatcatggatcat |
35774505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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