View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_high_7 (Length: 457)
Name: NF10197_high_7
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Original strand, 35362425 - 35362853
Alignment:
| Q |
16 |
tcagcaactgtttaatgatgtaaaacagatcaataaatcatcaaccgtatatgggaaaatgttttcgatcatgcaataggttttggataccgaaaattta |
115 |
Q |
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| T |
35362425 |
tcagcaactgtttaatgatggaaaacagatcaataaatcatcaaccgtatatgggaaaatgttttcgatcatgcaataggttttggataccgaaaattta |
35362524 |
T |
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| Q |
116 |
ctcgactataatgtataatgggaaatgtgattacacagtgcatgaaattaaaatatggtctgtctataaaatgtgatgccaaaatgcaaacgataagtga |
215 |
Q |
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| T |
35362525 |
ctcgactataatgtataatgggaaatgtgattccacagtgcatgaaattaaaatatggtctgtctataaaatgtgatgccaaaatgcaaacgataagtga |
35362624 |
T |
|
| Q |
216 |
ttccacaaactatacatatttgagaaggcacaccaacccttatcaaggtcaacatcctcaaaaacaagtattgggctctttccaccgagctctagaaaaa |
315 |
Q |
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| T |
35362625 |
ttccacaaactatacatatttgagaaggcacaccaacccttatcaaggtcaacatcctcaaaaacaagtattgggctctttccaccgagctctagaaaaa |
35362724 |
T |
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| Q |
316 |
caggctgcaaacaagaaaacacaaattcgatattgttgtgaatacggtcacttgttcaaaatcaacaagacaacatgtgaaacaaataacaatggcaata |
415 |
Q |
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| T |
35362725 |
caggctgcaaacaagaaaacacaaattcgatattgttgtgaattcggtcacttgttcaaaatcaacaagaccacatgtgaaacaaataacaatggcaata |
35362824 |
T |
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| Q |
416 |
atcttgtttaaaaagaatttgtagatatt |
444 |
Q |
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| T |
35362825 |
atcttgtttaaaaagaatttgtagatatt |
35362853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 212 - 339
Target Start/End: Complemental strand, 35384294 - 35384167
Alignment:
| Q |
212 |
gtgattccacaaactatacatatttgagaaggcacaccaacccttatcaaggtcaacatcctcaaaaacaagtattgggctctttccaccgagctctaga |
311 |
Q |
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| T |
35384294 |
gtgattccacaaattagacatatttgagaaggcacaccaacccttatcaagatcaacatcctcaaaaacaactatcgggctctttccaccaagctctagt |
35384195 |
T |
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| Q |
312 |
aaaacaggctgcaaacaagaaaacacaa |
339 |
Q |
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| T |
35384194 |
gaaacaggctgcaaacaagaaaacacaa |
35384167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 342
Target Start/End: Complemental strand, 44178807 - 44178718
Alignment:
| Q |
250 |
aacccttatcaaggtcaacatcctcaaaaacaagtattgggctctttccaccgagctctagaaaaacaggctgcaaacaagaaaacacaaatt |
342 |
Q |
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| T |
44178807 |
aacccttatcaaggtcaacgtcctcaaaaacaattaacgggctttttccaccaagctccagtgaaacaggctgc---caagaaaccacaaatt |
44178718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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