View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10197_low_1 (Length: 718)

Name: NF10197_low_1
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10197_low_1
NF10197_low_1
[»] chr3 (1 HSPs)
chr3 (20-701)||(47933299-47933978)


Alignment Details
Target: chr3 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 20 - 701
Target Start/End: Complemental strand, 47933978 - 47933299
Alignment:
Q  20 ttttagttacgtgacagcaactttaccattgcatcaaaactggtatattcgaaaataactgtcaggggtaatggcgaggtagtagcactaacaatgacga 119  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47933978 ttttagttacgtgacaacaactttaccattgcatcaaagctggtatattcgaaaataactgtcaggggtattggcgaggtagtagcactaacaatgacga 47933879  T
Q  120 aaccctcaaccgatgttctagaagggcaacaaatggttaattagaaggcaaaatagaagaatccaatggcgggctcactgacaagaacccataaacaaag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  47933878 aaccctcaaccgatgttctagaagggcaacaaatggttaattagaaggcaaaagagaagaatccaatggcgggctcactgacaagaaaccataaacaaag 47933779  T
Q  220 gtaacagaggagcttttccgttcaaaatattttacaaacacactaaatcagtgctagagtgtagtcttagggtgaaaaagagttaaggtcgccaacagtg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47933778 gtaacagaggagcttttccgttcaaaatattttacaaacacactaaatcagtgctagagtgtagtcttagggtgaaaaagagttaaggtcgccaacagtg 47933679  T
Q  320 ctgaaaactctatacaaggctttcactattgatgatacagtgtaaggaacaaagggtaggaatgtgaaagaatttgaaacaatatggtacgcaagaactt 419  Q
    |||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  47933678 ctgaaaactctatgtaaggctttcactattgatgatacagtgtaatgaacaaagggtaggaatgtgaaagaatttgaaacaat-tggtatgcaagaactt 47933580  T
Q  420 gaggcacttccaaactataatatattatagcttctcatgtcctgacctcacatcattaaaataaggtgaatttgatagtcaacttgattgccaagacgat 519  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47933579 gaggcacttccgaactataatatattatagcttctcatgtcctgacctcacatcattaaaataaggtgaatttgatagtcaacttgattgcctagacgat 47933480  T
Q  520 tctatcttagacttgttcaacgaagaagaagatcatctcatggaggcaatggccacttggtttcattcccttggaattttcggaaaaaaggtcaattttt 619  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47933479 tctatcttagacttgttcaacgaagaagcagatcatctcatggaggcaatggccacttggtttcattcccttggaattttcggaaaaaaggtcaattttt 47933380  T
Q  620 caaactgatcctacagaatatacgcggaagtaatgaccatcagaaaaatacatgattcaaaccctgtaatttttcttcctct 701  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47933379 caaactgatcctacagaatatacgc-gaagtaatgaccatcagaaaaatacatgattcaaaccctgtaatttttcttcctct 47933299  T

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