View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_12 (Length: 410)
Name: NF10197_low_12
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 35899100 - 35899490
Alignment:
| Q |
1 |
aaatcctgacacaataaatttgaagggtcctcctgctttgaatgtcttggcagcacagtgacaagagcaggtgcatggatgtttttcttcactcttaggt |
100 |
Q |
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| T |
35899100 |
aaatcctgacacaataaatttgaagggtcctcctgctttgaatgtcttggcagcacagtgacaagagcaggtgcatggatgtttttcttcactcttaggt |
35899199 |
T |
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| Q |
101 |
tccttcttctgaatctgagccatcatatatattcaaaaggaaaactgcaagctgctgcaaaaagtagggatacactaaatgcacctgaaaaagaaattca |
200 |
Q |
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| T |
35899200 |
tccttcttctgaatctgagccatc--atatattcaaaaggaaaactgcaagctgctgcaaaaagtagagatacactaaatgcacctgaaaaagaaattca |
35899297 |
T |
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| Q |
201 |
attaagtg-----ctgaattctataagcttatcaaatatctagaatcacaacttggaatacaaataaactgaaacaaaaagcacaggacaaagttcaaga |
295 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35899298 |
attaagtgttgatatgaattctataagcttatcaaatatctagaatcacaacttggaatacaaataaattgaaacaaaaagcacaggacaaagttcaaga |
35899397 |
T |
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| Q |
296 |
gacggattgaaagagcgagcactaataggaacacaagcacacaataaaaggtgaataccaacagcatccttaaagaagtcaacacttgggcgataag |
392 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35899398 |
gacagattgaaa----gagcactaataggaacacaagcacacaataaaaggtgaataccaacagcatccttaaagaagtcaacacttgggcgataag |
35899490 |
T |
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