View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_13 (Length: 407)
Name: NF10197_low_13
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_13 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 20 - 395
Target Start/End: Complemental strand, 38263439 - 38263080
Alignment:
| Q |
20 |
agatttcaaagcatataccattgtatagaaaaactattcttttatcgatagaaacataatttcaaactatgaaaaggagaatannnnnnnacaagtctta |
119 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
38263439 |
agatttcaaagcatataccattatatagaaaaactattcttttatcgatag----------------tatgaaaaggagaatatttttttacaagtctta |
38263356 |
T |
|
| Q |
120 |
ttcaaacacatatatcaatgtcaactagaaaggcgataagtgggaatggcagttaaatgatttgccctaggcatagtaagtccaaactcctctgtcatat |
219 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38263355 |
ttcaaacacatatatcaatatcaaccagaaaggcgataagtgggaatggcagttaaatgatttgccctaggcatagtaagtccaaactcctctgtcatat |
38263256 |
T |
|
| Q |
220 |
ccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttaggcctaattgcaatcc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38263255 |
ccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttaggcctaattgcaatcc |
38263156 |
T |
|
| Q |
320 |
aggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaacatctatattgctttcttca |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38263155 |
aggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaacatctatattgctttcttca |
38263080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 148 - 395
Target Start/End: Complemental strand, 38260356 - 38260109
Alignment:
| Q |
148 |
aaaggcgataagtgggaatggcagttaaatgatttgccctaggcatagtaagtccaaactcctctgtcatatccaaatcacttggtaacatatgattagg |
247 |
Q |
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|||| ||||||| || |||||| ||| || ||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260356 |
aaagacgataagcagggatggcaattagattattggctctaggcatagtaagaccaaaatcctctgtcatatccaaatcacttggtaacatatgattagg |
38260257 |
T |
|
| Q |
248 |
caatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttaggcctaattgcaatccaggacaaccccttctaccagacccaaat |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| || |||||| |
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| T |
38260256 |
caatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttagacctaattgtaatccaggacaacctcttctacctgagccaaat |
38260157 |
T |
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| Q |
348 |
ggtatgagctgaaaatcacgtcctctaacatctatattgctttcttca |
395 |
Q |
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|||||||||||||||||||||||| |||||||||||||| || ||||| |
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| T |
38260156 |
ggtatgagctgaaaatcacgtcctttaacatctatattgtttccttca |
38260109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 174 - 395
Target Start/End: Complemental strand, 27413677 - 27413456
Alignment:
| Q |
174 |
aaatgatttgccctaggcatagtaagtccaaactcctctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaa |
273 |
Q |
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|
|||||||| || ||||||||||||| ||||| |||| ||||| |||||||||||||||||||||| |||||| |||||| |||||||||||||||||| |
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| T |
27413677 |
aaatgattggctctaggcatagtaataccaaatgcctcagtcatgtccaaatcacttggtaacatatcattaggtaatttcaaatcaaagcaatgcacaa |
27413578 |
T |
|
| Q |
274 |
gttgagccaccaccaaacgaatcacagttaggcctaattgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctct |
373 |
Q |
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||| |||||||||||||| | || |||||| || || ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| |||||| |
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| T |
27413577 |
tttgggccaccaccaaacgcaccatagttagacccaaatgcaatccaggacaaccccttcttccagagccaaatggtataagctgaaagtcatgtcctcc |
27413478 |
T |
|
| Q |
374 |
aacatctatattgctttcttca |
395 |
Q |
| |
|
||||||||| ||| || ||||| |
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| T |
27413477 |
aacatctatgttgtttccttca |
27413456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 176 - 395
Target Start/End: Complemental strand, 7120 - 6901
Alignment:
| Q |
176 |
atgatttgccctaggcatagtaagtccaaactcctctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagt |
275 |
Q |
| |
|
|||||| || ||| ||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7120 |
atgattggctctacgcatagtaacaccaaatgcctctgccatgtccaaatcacttggtaacatatgattaggcaatttaaaatcaaagcaatgcacaagt |
7021 |
T |
|
| Q |
276 |
tgagccaccaccaaacgaatcacagttaggcctaattgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaa |
375 |
Q |
| |
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|| || ||||||||||| | || |||||| || ||||||||||||||||| |||||||| ||||| | ||||||||| || ||||||||| |||||| || |
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| T |
7020 |
tgggctaccaccaaacgcaccatagttagacccaattgcaatccaggacatccccttcttccagagctaaatggtataagttgaaaatcatgtcctccaa |
6921 |
T |
|
| Q |
376 |
catctatattgctttcttca |
395 |
Q |
| |
|
||||||| ||| || ||||| |
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| T |
6920 |
catctatgttgtttccttca |
6901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 176 - 361
Target Start/End: Original strand, 6761 - 6946
Alignment:
| Q |
176 |
atgatttgccctaggcatagtaagtccaaactcctctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagt |
275 |
Q |
| |
|
|||||| || ||||||||||||| ||||| |||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
6761 |
atgattggctctaggcatagtaacaccaaatgattctgtcatgtccaagtcacttggtaacatatcattaggcaatttaaaatcaaagcaatgcacaagt |
6860 |
T |
|
| Q |
276 |
tgagccaccaccaaacgaatcacagttaggcctaattgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaa |
361 |
Q |
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|| || ||| ||||||| | || |||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| || ||||| |
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| T |
6861 |
tgggctaccgccaaacgcaccatagttagacctaattgcaatccaggacatccccttcttccagagccaaatggtataagatgaaa |
6946 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 91184 - 91238
Alignment:
| Q |
317 |
tccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcct |
371 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| | |||||||||| ||||| |
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|
| T |
91184 |
tccaggacaaccccttctaccagcaccaaaaggtatcaactgaaaatcatgtcct |
91238 |
T |
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