View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_16 (Length: 367)
Name: NF10197_low_16
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 25 - 357
Target Start/End: Complemental strand, 47585739 - 47585409
Alignment:
| Q |
25 |
caaaaaatccatgtattctcttagatttacctctttgtttttagattcataaatctaacacaaaaaagaagcatggagcttttttctatacaataataca |
124 |
Q |
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| T |
47585739 |
caaaaaatccatgtattctcttagatttacctctttgtttttagattcataaatctaacacaaaaaagaagcatgaagcttttttctatacaataataca |
47585640 |
T |
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| Q |
125 |
caatcactttcttcatctttcatccaatatctctaagttttgaacaacaaaaagaaagccaaagtacctacaacagactccctaccggcctaattaacag |
224 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47585639 |
caatcactttcttcatctttcatccaatatct--aagttttgaacaacaaaaagaaagccaaagtacctacaacagactccctaccggcctaattaacag |
47585542 |
T |
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| Q |
225 |
cctttcaaatctctccatctaaggtaaattaacccatcacggtaatgtgtatatgcccccgccacaaccaagacatgaaaaagttggtgactatggccag |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47585541 |
cctttcaaatctctccatctaaggtaaattaacccatcacggtaatgtgtatatgcccccgccacaaccaagacatgaaaaagttggtgactatggccag |
47585442 |
T |
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| Q |
325 |
caatatcaaactttcccggcatccacctctctg |
357 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
47585441 |
caatatcaaactttcccggcatccacctctctg |
47585409 |
T |
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