View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_18 (Length: 354)
Name: NF10197_low_18
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 35 - 346
Target Start/End: Complemental strand, 9410837 - 9410522
Alignment:
| Q |
35 |
atctattggaagaactttgaaggagtgaagttaattggattgaactttgaagttcccaagttg-aggtgttgaattttgtcacatacagttgactgtgaa |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
9410837 |
atctattggaagaactttgaaggagtgaagttaattggattgaactttgaagctcccaagttggaggtgttgaattt-gtcacatacagttgactgtgaa |
9410739 |
T |
|
| Q |
134 |
aagtcccaaaaatatatgcaaacatagtttatactacaatttggggtaatcacatatttttgtctagtctata---nnnnnnnggtttattataatattg |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
9410738 |
aagtcccaaaaatatatgcaaacatagtttatactacaatttcgggcaatcacgtatttttgtctagtctatattttttttttggtttattataatattg |
9410639 |
T |
|
| Q |
231 |
gtacgaagttttctcaccgttgattaataaatgactaatcttc-ccaaagaacatgcttttctgaagatatgaattcaatgtaaaatgcttttctgagat |
329 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9410638 |
gtacgaagttttctcaccgctgattaataaatgactaatcttcgccaaggaacatgcttttctgaagatatgaattcaatgtaaaatgcttttctgagat |
9410539 |
T |
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| Q |
330 |
atgcagacattcttctc |
346 |
Q |
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||||| ||||||||||| |
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| T |
9410538 |
atgcatacattcttctc |
9410522 |
T |
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