View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_20 (Length: 336)
Name: NF10197_low_20
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 29553509 - 29553203
Alignment:
| Q |
13 |
aaaggcaggaacattccagccaccaaatacacagaaaacacccgcagaggttaacaacaaccaacagaaaccaaccccatcgagctagaaaagactccgg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29553509 |
aaaggcaggaacattccagccaccaaatacacagaaaacacccgcagaggttaacaacaaccaacagaacccaaccccatcgagctagaaaagactccgg |
29553410 |
T |
|
| Q |
113 |
ccactacaactatgaaggaaaaacccccaccatccaccacctagccttaatatatacaatgatgccaatactgacaaagaacattgaaatttgcaacatt |
212 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29553409 |
ccactacaactaagaaggaaaaacccccaccatccaccacctagccttaatata--caatgatgccaatactgacaaagaacattaaaatttgcaacatt |
29553312 |
T |
|
| Q |
213 |
ccatgttgtttaaatctgtgaggccatattttctaggtcctttgccacaaccatggttgttgtttctgctatattgcgatgccttaacactgatcttctt |
312 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29553311 |
ccatgttgtttaaatctgtgagtccatattttctaggtcctttaccacaaccatggttgttgtttctgctatattgcgatgccttaacactgatcttctt |
29553212 |
T |
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| Q |
313 |
agtttctta |
321 |
Q |
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||||||||| |
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| T |
29553211 |
agtttctta |
29553203 |
T |
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