View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_29 (Length: 278)
Name: NF10197_low_29
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_29 |
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| [»] scaffold0451 (1 HSPs) |
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| [»] scaffold0638 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 38263092 - 38262829
Alignment:
| Q |
1 |
attgctttcttcaaatctctctggccaaaacatttctggatcagtccaagcatttgggtctctcataactgaccatgaattcacaatgacccttgctttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38263092 |
attgctttcttcaaatctctctggccaaaacatttctggatcagtccaagcatttgggtctctcataactgaccatgaattcacaatgacccttgctttt |
38262993 |
T |
|
| Q |
101 |
ttaggtat-gaaaaaatcttcaaccatgcaatcttccaaggattgatgtggtattaataagggtgccactggatggagcctaaggctttcttttatagcc |
199 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38262992 |
ttaggtatagaaaaaatcttcaaccatgcaatcttccaaggattgatgtggtattaataagggtgccactggatggagcctaaggctttcttttatagcc |
38262893 |
T |
|
| Q |
200 |
atatccaaatactccaacttttccaaatctgattcttccacttttctcttcatacccaccacag |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38262892 |
atatccaaatactccaacttttccaaatctgattcttccacttttctcttcatacccaccacag |
38262829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 38260113 - 38259859
Alignment:
| Q |
9 |
cttcaaatctctctggccaaaacatttctggatcagtccaagcatttgggtctctcataactgaccatgaattcacaatgacccttgcttttttaggtat |
108 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| |||||||||||| |
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| T |
38260113 |
cttcaaacctctctggccaaaacttttctggatcagtccaagcatttggatctctcataattgaccatgcattcacaatgacccttgattttttaggtat |
38260014 |
T |
|
| Q |
109 |
gaaaaaatcttcaaccatgcaatcttccaaggattgatgtggtattaataagggtgccactggatggagcctaaggctttcttttatagccatatccaaa |
208 |
Q |
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||| || ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |
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| T |
38260013 |
gaataagtcttcaaccatgcaatcttccaaggattggtatggaattaataagggtgccactggatggagcctaagactttcttttattaccatttccaaa |
38259914 |
T |
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| Q |
209 |
tactccaacttttccaaatctgattcttccacttttctcttcatacccaccacag |
263 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38259913 |
tacttcaacttgtccaaatctgattcttccacttttctcttcatacccaccacag |
38259859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 27413460 - 27413208
Alignment:
| Q |
9 |
cttcaaatctctctggccaaaacatttctggatcagtccaagcatttgggtctctcataactgaccatgaattcacaatgacccttgcttttttaggtat |
108 |
Q |
| |
|
||||||||||||| ||||||||| | || || |||||||||| |||||| |||||||||| || |||| ||||||||||| ||||| ||||||||||| |
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| T |
27413460 |
cttcaaatctctcaggccaaaacttctcagggtcagtccaagaatttggatctctcataattgcccatccattcacaatgatccttgaatttttaggtat |
27413361 |
T |
|
| Q |
109 |
gaaaaaatcttcaaccatgcaatcttccaaggattgatgtggtattaataagggtgccactggatggagcctaaggctttcttttatagccatatccaaa |
208 |
Q |
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|
||||||||||||||| |||||||||||| |||||| ||||||| ||||| |||| |||||||||| | ||||||||||||||||||| |||| | |||| |
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| T |
27413360 |
gaaaaaatcttcaacagtgcaatcttccatggattggtgtggtactaataggggtaccactggatgaatcctaaggctttcttttataaccatgttcaaa |
27413261 |
T |
|
| Q |
209 |
tactccaacttttccaaatctgattcttccacttttctcttcatacccaccac |
261 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
27413260 |
tactccaacttgtccaaatctgattcctccacttttctcttcatacccaccac |
27413208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 6976 - 7228
Alignment:
| Q |
9 |
cttcaaatctctctggccaaaacatttctggatcagtccaagcatttgggtctctcataactgaccatgaattcacaatgacccttgcttttttaggtat |
108 |
Q |
| |
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||||||||||||| ||||||||| | || || |||||||||| |||||| |||||||||| || ||||| |||||| |||| ||||| ||||||||||| |
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| T |
6976 |
cttcaaatctctcaggccaaaacttctcagggtcagtccaagaatttggatctctcataattgcccatgcattcaccatgatccttgagtttttaggtat |
7075 |
T |
|
| Q |
109 |
gaaaaaatcttcaaccatgcaatcttccaaggattgatgtggtattaataagggtgccactggatggagcctaaggctttcttttatagccatatccaaa |
208 |
Q |
| |
|
|||||| |||||||| |||||||||||| |||||| ||||||| | ||| |||| |||||||||| | ||| ||||||||||||||| |||| | |||| |
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| T |
7076 |
gaaaaattcttcaacagtgcaatcttccatggattggtgtggtactgataggggtaccactggatgaaacctgaggctttcttttataaccatgttcaaa |
7175 |
T |
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| Q |
209 |
tactccaacttttccaaatctgattcttccacttttctcttcatacccaccac |
261 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
7176 |
tactccaacttctccaaatctgattcctccacttttctcttcatacccaccac |
7228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 6905 - 6653
Alignment:
| Q |
9 |
cttcaaatctctctggccaaaacatttctggatcagtccaagcatttgggtctctcataactgaccatgaattcacaatgacccttgcttttttaggtat |
108 |
Q |
| |
|
||||||||||||| ||||||||| | || ||||||||||||| |||||| |||||||||| || ||||| |||||||| || | ||| ||||||||||| |
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| T |
6905 |
cttcaaatctctcaggccaaaacttctcaggatcagtccaagaatttggatctctcataattgcccatgcattcacaacgatcattgagtttttaggtat |
6806 |
T |
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| Q |
109 |
gaaaaaatcttcaaccatgcaatcttccaaggattgatgtggtattaataagggtgccactggatggagcctaaggctttcttttatagccatatccaaa |
208 |
Q |
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||||| |||||||| |||||||||||| |||||| ||||||| ||||| |||| |||||||||| | ||| ||||||||||||||| | || | || | |
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| T |
6805 |
aaaaaattcttcaacggtgcaatcttccatggattggtgtggtactaataggggtaccactggatgaatcctgaggctttcttttataacgatgttcaga |
6706 |
T |
|
| Q |
209 |
tactccaacttttccaaatctgattcttccacttttctcttcatacccaccac |
261 |
Q |
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||||||||||| |||||||| ||||| || ||||||||||||||||||||||| |
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| T |
6705 |
tactccaacttgtccaaatcagattcctctacttttctcttcatacccaccac |
6653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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