View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_3 (Length: 528)
Name: NF10197_low_3
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 455838 - 455316
Alignment:
| Q |
1 |
acgagttttatcttcttaactagtgctctaagagatgcataaccctaaagttttttaccatggtgaagttggtttttaaccaataaa---------gcac |
91 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
455838 |
acgagttttatcttcttaactagtgctctacgagacgcataaccctaaagttttttaccatggtgaagttggtttttaaccaataaatcaaataaagcac |
455739 |
T |
|
| Q |
92 |
atggtttcatcgtacgtaggccctcaacctcaacctcacccactaaaagtgatacttatattgtcacaatcaaatacctgcaaaattagccaaattgagc |
191 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
455738 |
atggtttcatcgtacgtaggtcctcaacctcaacctcacccactaaaagtgatacttatattgttacaatcaaatacctgcaaaattagccaaattgagc |
455639 |
T |
|
| Q |
192 |
cggcaacactacttcccaacagaaagagacaaccaatcaaccaattctcatcactttccaaggttgtggtcatcattgtttttgaaggcatcttatgatc |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
455638 |
cggcaacactacttcccaacagaaagagacaaccaatcaaccaattctcatcactttccaaggttgtggtcatcattgtttttgaaggcatcttatgatc |
455539 |
T |
|
| Q |
292 |
tgcatttagtagttttggacccttcaataatgtcatg------gacactgctccagtaacacatatcattgtcccaactattttggctatagttctcaaa |
385 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
455538 |
tgcatttagtagttttggacccttcaataatgtcatggacagtgacactgctccagtaacacatatcattgtcccaactattttggctatagttctcaaa |
455439 |
T |
|
| Q |
386 |
ctttgaatattcactttctccattctgtaatatattcaataaaaatgattcaaactcaacaaaagtaattaagttgagtttagtaagattagtatataat |
485 |
Q |
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| T |
455438 |
ctttgaatattcactttctccattctgtaatatattcaataaaaatgattcaaactcaacaaaag----taagttgagtttagtaagattagtatataat |
455343 |
T |
|
| Q |
486 |
tacccaacaaaggttgctataacaaat |
512 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
455342 |
tacccaacaaaggttgctataacaaat |
455316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 218 - 425
Target Start/End: Complemental strand, 467890 - 467683
Alignment:
| Q |
218 |
agacaaccaatcaaccaattctcatcactttc---caaggttgtggtcatcattgtttttgaaggcatcttatgatctgcatttagtagttttggaccct |
314 |
Q |
| |
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||||| |||| ||||||||||||||||||| | |||||||||| ||| |||| ||||||| | ||||| |||||||||||||||||||||||||| |
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| T |
467890 |
agacatccaagcaaccaattctcatcacttcctaataaggttgtggccatgattgattttgaaagtatctt---atctgcatttagtagttttggaccct |
467794 |
T |
|
| Q |
315 |
tcaataatgtcatggacactgctccagtaacacatatcattgtcccaactattttggctatagttctcaaactttgaatattcactttctccattctgta |
414 |
Q |
| |
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|||| |||| || |||||||||||| | |||||||| |||||||| |||||||||||||||||||| | |||| ||||||||||||| ||||||||||| |
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| T |
467793 |
tcaacaatgcaattgacactgctccacttacacatataattgtccccactattttggctatagttcttatacttcgaatattcactttttccattctgta |
467694 |
T |
|
| Q |
415 |
atatattcaat |
425 |
Q |
| |
|
||||| ||||| |
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| T |
467693 |
atataatcaat |
467683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 163 - 420
Target Start/End: Complemental strand, 474979 - 474722
Alignment:
| Q |
163 |
aaatacctgcaaaattagccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaattctcatcactttccaaggttgtggtc |
262 |
Q |
| |
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||||||||||||||| ||||||| ||| | |||||||||||||||||| ||| | | ||| |||| ||||||| | |||||||| | ||||| ||| | |
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| T |
474979 |
aaatacctgcaaaatgagccaaagtgaccaggcaacactacttcccaaaagatacacacatccaagcaaccaactatcatcactaccggaggttatggcc |
474880 |
T |
|
| Q |
263 |
atcattgtttttgaaggcatcttatgatctgcatttagtagttttggacccttcaataatgtcatggacactgctccagtaacacatatcattgtcccaa |
362 |
Q |
| |
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|| || | ||||| ||| | | | |||||||||||||| |||||||||||||| |||| || |||| ||||||| ||||||||| | |||||| | |
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| T |
474879 |
atgatagattttgtaggtagtatgttttctgcatttagtagctttggacccttcaacaatgctatagacaatgctccacaaacacatattaatgtcccta |
474780 |
T |
|
| Q |
363 |
ctattttggctatagttctcaaactttgaatattcactttctccattctgtaatatat |
420 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || ||||||||||||||||||||||| |
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|
| T |
474779 |
ctattttggctatagttctcaaacttcgaatgttgactttctccattctgtaatatat |
474722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 163 - 425
Target Start/End: Complemental strand, 446935 - 446673
Alignment:
| Q |
163 |
aaatacctgcaaaattagccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaatt---ctcatcactttccaaggttgtg |
259 |
Q |
| |
|
||||||||||||||| |||||| |||| || ||||| |||||||||| |||| ||||| |||| ||||| || |||||||||| | |||||||| |
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| T |
446935 |
aaatacctgcaaaatgagccaagttgaccctccaacagtacttcccaaaagaattagacatccaagaaaccagttgttctcatcacttgtcgaggttgtg |
446836 |
T |
|
| Q |
260 |
gtcatcattgtttttgaaggcatcttatgatctgcatttagtagttttggacccttcaataatgtcatggacactgctccagtaacacatatcattgtcc |
359 |
Q |
| |
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| ||| |||| |||||||| || || | ||||||||| |||||||||||||| || |||| ||||||| ||||||| ||||||||| ||||| | |
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|
| T |
446835 |
gccatgattgattttgaagatatatttt---ctgcatttaaaagttttggaccctttaacaatgcgatggacattgctccacaaacacatattattgttc |
446739 |
T |
|
| Q |
360 |
caactattttggctatagttctcaaactttgaatattcactttctccattctgtaatatattcaat |
425 |
Q |
| |
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| |||||||||||||||||||||| |||| ||||||| | |||||||||||||||||||| ||||| |
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| T |
446738 |
ccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaatataatcaat |
446673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 297 - 419
Target Start/End: Complemental strand, 480192 - 480070
Alignment:
| Q |
297 |
ttagtagttttggacccttcaataatgtcatggacactgctccagtaacacatatcattgtcccaactattttggctatagttctcaaactttgaatatt |
396 |
Q |
| |
|
||||||| |||||||||||||| |||| || || ||||||||| | | |||||||| |||||| |||||||||||||||||||||| |||| ||||||| |
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| T |
480192 |
ttagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtccccactattttggctatagttctcatacttcgaatatt |
480093 |
T |
|
| Q |
397 |
cactttctccattctgtaatata |
419 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
480092 |
tactttctccattctgtaatata |
480070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 163 - 421
Target Start/End: Original strand, 27491398 - 27491653
Alignment:
| Q |
163 |
aaatacctgcaaaattagccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaattctcatcactttccaaggttgtggtc |
262 |
Q |
| |
|
||||||||||||||| ||||||| ||| | |||||||| ||||| || |||| | ||| |||| ||||||||||||||||||| | ||||||||| |
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|
| T |
27491398 |
aaatacctgcaaaataagccaaactgaccaggcaacacagcttccaaaaagaaccaaacatccaagcaaccaattctcatcacttcctaaggttgtgcca |
27491497 |
T |
|
| Q |
263 |
atcattgtttttgaaggcat-cttatgatctgcatttagtagttttggacccttcaataatgtcatggacactgctccagtaacacatatcattgtccca |
361 |
Q |
| |
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|| |||| |||||||| || ||| ||||||||||| || |||||||||||||||| || ||| ||||||||||| | |||| ||| ||||| || |
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| T |
27491498 |
atgattgattttgaagttatgctt----tctgcatttagcagctttggacccttcaatagtgcaatgaacactgctccacttacacctataattgttcct |
27491593 |
T |
|
| Q |
362 |
actattttggctatagttctcaaactttgaatattcactttctccattctgtaatatatt |
421 |
Q |
| |
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| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
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|
| T |
27491594 |
attattttggctatagttctcaaacttctaatattcacttgctccattctgtaaaatatt |
27491653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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