View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_34 (Length: 254)
Name: NF10197_low_34
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 47126999 - 47127150
Alignment:
| Q |
15 |
cataggcgaccaaatttattaaaagctgggttttcaggtgcaaagttctataatatacatgtgttaattttatattttccaatgtaattctcatctcata |
114 |
Q |
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| T |
47126999 |
cataggcgaccaaatttattaaaagctgggttttcaggtgcaaagttctataatatacatgtgttaattttatattttccaatgtaattctcatctcata |
47127098 |
T |
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| Q |
115 |
tatatttacaaatgtatgtacatatttttaaaattgatacttagtaagttgc |
166 |
Q |
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| T |
47127099 |
tatatttacacatgtatgtacatatttttaaaattgatacttagtgagttgc |
47127150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 47127200 - 47127238
Alignment:
| Q |
212 |
agatgacttgaagcttccggttgaagggcaatgtgatgc |
250 |
Q |
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| T |
47127200 |
agatgacttgaagcttccggttgaagggcaatgtgatgc |
47127238 |
T |
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