View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_36 (Length: 253)
Name: NF10197_low_36
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_36 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 6 - 253
Target Start/End: Complemental strand, 41573695 - 41573439
Alignment:
| Q |
6 |
agaagcaaaggcaaacgagtctgatattaatgaattcaggtttacgctttctccttccaccaatgaccctaacctcgtgcaattggagcttgattcctct |
105 |
Q |
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| T |
41573695 |
agaagaaaaggcaaacgagtctgatattaatgaattcaggtttacgctttctccttccaccaatgaccctaacctcgtgcaattggagcttgattcctct |
41573596 |
T |
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| Q |
106 |
gaacctaactccaaacctcagctcacagcctctttgttgaaatctgccaccaagttccgtgttttcatatcaggtctcaacaaatcaaacaaat------ |
199 |
Q |
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| T |
41573595 |
gaacctaactccaaacctcagctcacagcctctttgttgaaatctgccaccaagttccgtgttttcatatcaggtctcaacaaatcaaacaaatcctcta |
41573496 |
T |
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| Q |
200 |
---cctcatctcaaaatcccaatcaacaaccaaagtcagagtcacagaaaaagaagc |
253 |
Q |
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| T |
41573495 |
attcctcatctcaaaatcccaatcaacaaccaaagtcagagtcacagaaaaagaagc |
41573439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 33 - 158
Target Start/End: Complemental strand, 15787367 - 15787242
Alignment:
| Q |
33 |
taatgaattcaggtttacgctttctccttccaccaatgaccctaacctcgtgcaattggagcttgattcctctgaacctaactccaaacctcagctcaca |
132 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15787367 |
taatgaatttaggtttacgctttctccttccaccaatgaccctaacctcctgcaattagagcttgattcctctgaacctaactccaaacctcagctcaca |
15787268 |
T |
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| Q |
133 |
gcctctttgttgaaatctgccaccaa |
158 |
Q |
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|||||||||||||||||||| |||| |
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| T |
15787267 |
acctctttgttgaaatctgcctccaa |
15787242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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