View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_37 (Length: 250)
Name: NF10197_low_37
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 48106184 - 48105951
Alignment:
| Q |
1 |
aaacctattgattaatcctaaggctcaaaaatatggaaagaatgatgttattttaattttgacaaagttgtagaattcgatgaaaacaaaaagatattag |
100 |
Q |
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| T |
48106184 |
aaacctattgattaatcctaaggctcaaaaatatggaaagaatgatgttattttaattttgacaaagttgtagaattcgatgaaaacaaaaagatattag |
48106085 |
T |
|
| Q |
101 |
ggatgttgaaatattatctcatgacaggtaaaagttattgaattgggaggttgtgttgataattggtatgaaattgagtttgttaggaatgttttaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48106084 |
ggatgttgaaatattatctcatgacaggtaaaagttattgaattgggaggttgtgttgataattggtatgaaattgagtttgttaggaatgttttaaaat |
48105985 |
T |
|
| Q |
201 |
atgttcataaacttgagcaaatggttgtgacttg |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
48105984 |
atgttcataaacttgagcaaatggttgtgacttg |
48105951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 87 - 230
Target Start/End: Complemental strand, 48107091 - 48106947
Alignment:
| Q |
87 |
caaaaagatattagggatgttgaaatattatctcatgac-aggtaaaagttattgaattgggaggttgtgttgataattggtatgaaattgagtttgtta |
185 |
Q |
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||||||||||| ||||||||||||| ||| ||||||||| | ||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
48107091 |
caaaaagatatcagggatgttgaaacattctctcatgacgaagtaaaagttattgaattaggaggctgtgttggcaattggtatgaaattgaatttgtta |
48106992 |
T |
|
| Q |
186 |
ggaatgttttaaaatatgttcataaacttgagcaaatggttgtga |
230 |
Q |
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| T |
48106991 |
tgaatgttctaaaatatgcccacaaacttgagcaaatagttgtga |
48106947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 222
Target Start/End: Complemental strand, 47051055 - 47050919
Alignment:
| Q |
87 |
caaaaagatattagggatgttgaaatattatctcatgac-aggtaaaagttattgaattgggaggttgtgttgataattggtatgaaattgagtttgtta |
185 |
Q |
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||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
47051055 |
caaaaagatattagggatgttgagatattatctcatgatgatataagggttattgaattgagaggttgtgttggcaattggtatgaaattgagtttgtta |
47050956 |
T |
|
| Q |
186 |
ggaatgttttaaaatatgttcataaacttgagcaaat |
222 |
Q |
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||||||| |||||| || || || ||||||||||| |
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| T |
47050955 |
agaatgttctaaaatgtgcccacaagcttgagcaaat |
47050919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 93 - 232
Target Start/End: Original strand, 47929385 - 47929525
Alignment:
| Q |
93 |
gatattagggatgttgaaatattatctcatgac-aggtaaaagttattgaattgggaggttgtgttgataattggtatgaaattgagtttgttaggaatg |
191 |
Q |
| |
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||||||| |||||||| | |||| ||||| || ||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||| ||||| |
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| T |
47929385 |
gatattatggatgttggagtattctctcacaacgaggtaaaagttattgaatttggaggatgtgttggcaattggtttgaaattgagtttgttatgaatg |
47929484 |
T |
|
| Q |
192 |
ttttaaaatatgttcataaacttgagcaaatggttgtgact |
232 |
Q |
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|| ||||||||| || ||||||||| |||| ||| ||||| |
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| T |
47929485 |
ttataaaatatgcacacaaacttgagaaaatagttatgact |
47929525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 202
Target Start/End: Original strand, 48895724 - 48895828
Alignment:
| Q |
99 |
agggatgttgaaatattatctcatgac-aggtaaaagttattgaattgggaggttgtgttgataattggtatgaaattgagtttgttaggaatgttttaa |
197 |
Q |
| |
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||||||||||||| ||| ||||||||| | || || |||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||| |
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| T |
48895724 |
agggatgttgaaacattctctcatgacgaagttaagattattgaattgggaggttgtgttggcaattggtttgaaattgagtttgttatgaatgttctaa |
48895823 |
T |
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| Q |
198 |
aatat |
202 |
Q |
| |
|
||||| |
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|
| T |
48895824 |
aatat |
48895828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 48452961 - 48452879
Alignment:
| Q |
133 |
agttattgaattgggaggttgtgttgataattggtatgaaattgagtttgttaggaatgttttaaaatatgttcataaacttgag |
217 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||| | ||||| |||||||||| || ||||||||| |
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| T |
48452961 |
agttattgaattgggaggttgtgttggcaattcgtatgaaattgagtttgtcatgaatg--ttaaaatatgcccacaaacttgag |
48452879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 90 - 230
Target Start/End: Original strand, 39403521 - 39403662
Alignment:
| Q |
90 |
aaagatattagggatgttgaaatattatctcatgac-aggtaaaagttattgaattgggaggttgtgttgataattggtatgaaattgagtttgttagga |
188 |
Q |
| |
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||||||| ||||||| ||||| ||| |||||||| || |||||||||||||||| | ||||||||||| ||||||| ||||||||||||||||| || |
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| T |
39403521 |
aaagatagtagggatattgaaggattctctcatgatgagctaaaagttattgaatttgaaggttgtgttggcaattggtttgaaattgagtttgttacga |
39403620 |
T |
|
| Q |
189 |
atgttttaaaatatgttcataaacttgagcaaatggttgtga |
230 |
Q |
| |
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||||| ||||||||| |||||||| |||||||| ||||||| |
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| T |
39403621 |
atgttctaaaatatgcccataaactcgagcaaatagttgtga |
39403662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 50460277 - 50460359
Alignment:
| Q |
102 |
gatgttgaaatattatctcatgac-aggtaaaagttattgaattgggaggttgtgttgataattggtatgaaattgagtttgt |
183 |
Q |
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||||||||||||| ||||||||| || | | |||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
50460277 |
gatgttgaaatatgctctcatgacgagatcagagttattgaattgggaggctgtgttggcaattggtatgaaattgagtttgt |
50460359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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