View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_38 (Length: 249)
Name: NF10197_low_38
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6942631 - 6942868
Alignment:
| Q |
1 |
ctgcagagcagctgcagttcctttttattatgagagaaatagtaatgtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaac |
100 |
Q |
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| T |
6942631 |
ctgcagagcagctgcagttcctttttattatgagagaaagagtaatgtttacaatgcacaacttgtgtataaacactattgtccagattacaacatcaac |
6942730 |
T |
|
| Q |
101 |
cctgaaccgtacccccagtcgccatcacgcaacaaactatgataccattgttccttatgctcatttcccagtctttaccctctttgaactttgaannnnn |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6942731 |
cctgaaccgtacccccagtcgccatcatgcaacaaactatgataccattgttccttatgctcatttcccagtctttaccctctttgaactttgaattttt |
6942830 |
T |
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| Q |
201 |
nnctttatcatcatctactcatctttcctccaattctt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6942831 |
ttctttatcatcatctactcatctttcctccaattctt |
6942868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6939456 - 6939693
Alignment:
| Q |
1 |
ctgcagagcagctgcagttcctttttattatgagagaaatagtaatgtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6939456 |
ctgcagagcagctgcagttcctttttattatgagagaaagagtaatgtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaac |
6939555 |
T |
|
| Q |
101 |
cctgaaccgtacccccagtcgccatcacgcaacaaactatgataccattgttccttatgctcatttcccagtctttaccctctttgaactttgaannnnn |
200 |
Q |
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| T |
6939556 |
cgtgaaccgtacccccagtcgccatcacgcaacaaactatgataccattgttccttatgctccattcccagtctttaccctctttgaactttgaattttt |
6939655 |
T |
|
| Q |
201 |
nnctttatcatcatctactcatctttcctccaattctt |
238 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
6939656 |
ttctttatcatcatctactcatatttcctccaattctt |
6939693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 6788092 - 6787945
Alignment:
| Q |
1 |
ctgcagagcagctgcagttcctttttattatgagagaaatagtaatgtttacaatgcacaacgtgtgtataa----aaactattgtccagattacaacat |
96 |
Q |
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|||||||| ||||||||||||||||||||||||| |||| | ||| |||||||||||||||| ||||||||| | |||||||||||||||||||||| |
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| T |
6788092 |
ctgcagagaagctgcagttcctttttattatgagtgaaagattaaggtttacaatgcacaacttgtgtataattaaacactattgtccagattacaacat |
6787993 |
T |
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| Q |
97 |
caaccctgaaccgtacccccagtcgccatcacgcaacaaactatgata |
144 |
Q |
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|| ||||||||| |||||||||||||||| || ||||||||||||||| |
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| T |
6787992 |
cacccctgaaccatacccccagtcgccattacacaacaaactatgata |
6787945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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