View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10197_low_4 (Length: 487)
Name: NF10197_low_4
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_4 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 28 - 429
Target Start/End: Original strand, 9394334 - 9394736
Alignment:
| Q |
28 |
tttcaacataattaaaatagaaacagaatttccaacatgcaataaaagaaataaacactaaaacccaattttcaacacgaaatcatatgaataaacccta |
127 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9394334 |
tttcaacataaataaaatagaaacagaatttccaacatgcaataaaagaaataaacactaaaacccaattttcaacacgaaatcatatgaataaacccta |
9394433 |
T |
|
| Q |
128 |
aagcagaaaattctcaacataaaatcaaacaaaataacataaaaacacagttgccagcatgcaatcaaagaaataaaccctaaa-catcaaattttcaac |
226 |
Q |
| |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
9394434 |
aagaagaaaattttcaacataaaatcaaacaaaataacataaaaacacagttgccaacatgaaatcaaagaaataaaccctaaaacatcaaattttcaac |
9394533 |
T |
|
| Q |
227 |
aagaaatcaaaaacagaaatttatgaacattatatgaaatagaatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttg |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9394534 |
aagaaatcaaaaacagaaatttatgaacattatatgaaatagaatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttg |
9394633 |
T |
|
| Q |
327 |
gcttcacggtagtgaaacttcgccttcaaactttcatcctcactcgattcactacaaaacacaatcatatagcagtaaatttcaaatcttgcaataacac |
426 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9394634 |
gcttcacggtagtgaaactttgccttcaaactttcatcctcactcgattcactacaaaacacaatcatatagcagtaaatttcaaatcttgcaataacac |
9394733 |
T |
|
| Q |
427 |
aac |
429 |
Q |
| |
|
||| |
|
|
| T |
9394734 |
aac |
9394736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 9393947 - 9394002
Alignment:
| Q |
183 |
agcatgcaatcaaagaaataaaccctaaacatcaaattttcaacaagaaatcaaaaa |
239 |
Q |
| |
|
|||||| |||||||||||| || |||||| | ||||||||||||| ||||||||||| |
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|
| T |
9393947 |
agcatgaaatcaaagaaatgaatcctaaa-accaaattttcaacatgaaatcaaaaa |
9394002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 117 - 429
Target Start/End: Original strand, 1341951 - 1342284
Alignment:
| Q |
117 |
aataaaccctaaagcagaaaattctcaacataaaatcaaacaaaataacataaaaacacagttgccagcatgcaatcaaagaaataaaccctaaa-catc |
215 |
Q |
| |
|
||||||||||||| | |||||| | ||||||||||||||||||||||||||| | |||| || || ||||||||||||||||||||||||||| || | |
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|
| T |
1341951 |
aataaaccctaaaaaacaaaattttgaacataaaatcaaacaaaataacataata-cacaattttcaacatgcaatcaaagaaataaaccctaaaacacc |
1342049 |
T |
|
| Q |
216 |
aaattttcaacaagaaat--------------caaaaacagaaatttatgaacattatatgaaatagaatagaaaccttgacataagcattatcctccag |
301 |
Q |
| |
|
||| |||||||| ||||| ||||| || |||||||| |||||| || ||||| ||||||||||||||||||||||||||||||||| |
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| T |
1342050 |
aaaatttcaacatgaaataaagtaaaataaaacaaaagcacaaatttatcaacatttaataaaataaaatagaaaccttgacataagcattatcctccag |
1342149 |
T |
|
| Q |
302 |
cttatataaaatcccatcaaccttggcttcacggtagtgaaacttcgccttcaaactttcatcctcactcgattcactacaaaacacaa-------tcat |
394 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |
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|
| T |
1342150 |
cttatataaaatcccatcaaccttcgcttcatgatagtgaaacttcgccttcaaactttcaccctcactcaattcactacaaaacacaatcataattcat |
1342249 |
T |
|
| Q |
395 |
atagcagtaaatttcaaatcttgcaataacacaac |
429 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
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|
| T |
1342250 |
atagcagtaaatttcaaatcttgcattaacacaac |
1342284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 269 - 429
Target Start/End: Original strand, 31944088 - 31944248
Alignment:
| Q |
269 |
aatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttggcttcacggtagtgaaacttcgccttcaaactttcatcctca |
368 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
31944088 |
aatagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttgaaactttcatcatca |
31944187 |
T |
|
| Q |
369 |
ctcgattcactacaaaacacaatcatatagcagtaaatttcaaatcttgcaataacacaac |
429 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
31944188 |
ctcgattcactacaaaacacaatcatataacattaattttcaaatcttgcaataacacaac |
31944248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 31943907 - 31943977
Alignment:
| Q |
141 |
tcaacataaaatcaaacaaaataacataaaaacacagttgccagcatgcaatcaaagaaataaaccctaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | || || |||| ||||| ||||||||| |||||| |
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|
| T |
31943907 |
tcaacataaaatcaaacaaaataacataaacaccgaattttcaacatgtaatcatagaaataaatcctaaa |
31943977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 35535401 - 35535496
Alignment:
| Q |
269 |
aatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttggcttcacggtagtgaaacttcgccttcaaactttcatc |
364 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| || ||||||||| || ||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
35535401 |
aatagaaaccttgacataagcattattatccagattatatataaccccatcaactttcgcttcacggtaatgaaactacgccttcaaactttcatc |
35535496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 354
Target Start/End: Original strand, 5644293 - 5644378
Alignment:
| Q |
269 |
aatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttggcttcacggtagtgaaacttcgccttca |
354 |
Q |
| |
|
||||| |||||| |||||||||||||| | ||||||||||| || ||||||||| || |||||||||| |||||||||||||||| |
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|
| T |
5644293 |
aataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaacttcgccttca |
5644378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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